Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0413
(372 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05) 44 3e-05
SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013) 44 3e-05
SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.30
SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07) 30 0.52
SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.2
SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_4149| Best HMM Match : VWA (HMM E-Value=0) 28 2.1
SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 2.1
SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1) 28 2.8
SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023) 28 2.8
SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4) 27 3.7
SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18) 27 3.7
SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0) 27 3.7
SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27) 27 3.7
SB_17449| Best HMM Match : DAD (HMM E-Value=1.7) 27 3.7
SB_31698| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004) 27 4.9
SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 4.9
SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.4
SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28) 27 6.4
SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 26 8.5
SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 26 8.5
>SB_39784| Best HMM Match : WH2 (HMM E-Value=2e-05)
Length = 480
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/28 (75%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Frame = +2
Query: 257 GLGGLFAGGMPKLRPTG--KXAGSTPNG 334
GLGGLFAGGMPKLRP G K AG+ P G
Sbjct: 93 GLGGLFAGGMPKLRPAGERKAAGAGPRG 120
Score = 42.7 bits (96), Expect = 9e-05
Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Frame = +3
Query: 51 GGSKKGGGADDRNALLSSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSGTV--AGNGVQAP 224
G K + +R ALLS I +GA+LKKTVT D+S P + + + G + + +
Sbjct: 19 GPVKPPPSSKNRGALLSDIHKGARLKKTVTNDRSAPVVANEKKSSSGGNLSSSSSSTGGG 78
Query: 225 PPMQNGGGAPLG 260
GGG +G
Sbjct: 79 GGFSGGGGGSMG 90
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = -3
Query: 280 PSKQSTEPRGAPPPFCIG----GGACTPFPATVPLGTLFTFPGMYGPLLSTVTVFFNLAP 113
P ++ +P G PPP G G P P P +F GP+ + + N
Sbjct: 360 PPGRAPQPLGGPPPPPPGRRPPSGKINPPPPPPPAMDKPSFTN--GPVSNNIMDSKNSFE 417
Query: 112 CLIELRSAFLSSAPPPFLDPPNT 44
C R+ P P+ D P T
Sbjct: 418 CRFNFRTLNELPPPEPYQDTPKT 440
>SB_10535| Best HMM Match : Extensin_2 (HMM E-Value=0.013)
Length = 392
Score = 44.4 bits (100), Expect = 3e-05
Identities = 21/28 (75%), Positives = 22/28 (78%), Gaps = 2/28 (7%)
Frame = +2
Query: 257 GLGGLFAGGMPKLRPTG--KXAGSTPNG 334
GLGGLFAGGMPKLRP G K AG+ P G
Sbjct: 5 GLGGLFAGGMPKLRPAGERKAAGAGPRG 32
Score = 27.5 bits (58), Expect = 3.7
Identities = 22/83 (26%), Positives = 31/83 (37%), Gaps = 4/83 (4%)
Frame = -3
Query: 280 PSKQSTEPRGAPPPFCIG----GGACTPFPATVPLGTLFTFPGMYGPLLSTVTVFFNLAP 113
P ++ +P G PPP G G P P P +F GP+ + + N
Sbjct: 272 PPGRAPQPLGGPPPPPPGRRPPSGKINPPPPPPPAMDKPSFTN--GPVSNNIMDSKNSFE 329
Query: 112 CLIELRSAFLSSAPPPFLDPPNT 44
C R+ P P+ D P T
Sbjct: 330 CRFNFRTLNELPPPEPYQDTPKT 352
>SB_55393| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1597
Score = 31.1 bits (67), Expect = 0.30
Identities = 17/33 (51%), Positives = 18/33 (54%)
Frame = +3
Query: 132 TVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPP 230
T V +SG PG PSGT AGN Q PPP
Sbjct: 713 TPPVQQSGA--PGSPAGSPSGTSAGNPQQQPPP 743
>SB_49500| Best HMM Match : Collagen (HMM E-Value=1.8e-07)
Length = 621
Score = 30.3 bits (65), Expect = 0.52
Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%)
Frame = +3
Query: 150 SGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGGAPLGSVDC---LLGEC-QSYGL 302
SGP +P PSG NG Q PP + G G +D L+ EC Q GL
Sbjct: 79 SGPQVPNGPQG-PSGPQGPNGPQGPPRLDLGPSLDFGWLDLLPPLIPECYQGEGL 132
>SB_11571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 469
Score = 29.1 bits (62), Expect = 1.2
Identities = 28/82 (34%), Positives = 30/82 (36%), Gaps = 5/82 (6%)
Frame = -3
Query: 280 PSKQSTEPRGAPPPFCIGGGACTPFPAT-VPLGTLFTFPGMYGP----LLSTVTVFFNLA 116
PS+QS PR PP C TP P T P + T P Y P L T
Sbjct: 83 PSRQSNNPRPHTPPSCQSN---TPRPLTPPPRQSNTTQPPAYPPRQSYALQQTTPLHTSQ 139
Query: 115 PCLIELRSAFLSSAPPPFLDPP 50
P R S P PF PP
Sbjct: 140 PLRPTPRRP--SDTPQPFTPPP 159
>SB_19516| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 255
Score = 28.7 bits (61), Expect = 1.6
Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
Frame = -3
Query: 319 TCXFPCRP*LWHSPSKQSTEPRG--APPPFCIGGGACTPFPATVPLGTLFTFP 167
+C CR +H P + + EP AP P I A T P TVP T P
Sbjct: 138 SCYLKCRN--FHDPHRNTPEPATTCAPVPTTIPTTATTTEPTTVPTTIPTTIP 188
>SB_4149| Best HMM Match : VWA (HMM E-Value=0)
Length = 1141
Score = 28.3 bits (60), Expect = 2.1
Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +3
Query: 165 PGKVNNVPSGTVAGNGVQAPPPMQNGGGA-PLGSVDCLLGE-CQS 293
P VN + G++ G PPP+ GG P SV+C E CQS
Sbjct: 643 PKVVNTICRGSIYGK-CPPPPPLPPGGTCPPQPSVNCSTDENCQS 686
>SB_40644| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 239
Score = 28.3 bits (60), Expect = 2.1
Identities = 19/66 (28%), Positives = 26/66 (39%)
Frame = +3
Query: 69 GGADDRNALLSSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGG 248
GG L R A L T P + G+ + VP+ PPP+ GGG
Sbjct: 83 GGIKQIEVLKREARVRAGLPPTYEEQCPAPPLAGRSSRVPTP-------HTPPPIVGGGG 135
Query: 249 APLGSV 266
P+G +
Sbjct: 136 RPVGDL 141
>SB_16095| Best HMM Match : Podocalyxin (HMM E-Value=1)
Length = 768
Score = 27.9 bits (59), Expect = 2.8
Identities = 19/60 (31%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +3
Query: 78 DDRNALLSSIRQGAKLKKTVTVDKSGPYI-PGKVNNVPSGTVAGNGVQAPPPMQNGGGAP 254
++ N +S +R+ L+K T + + P P P G AG PPP GG AP
Sbjct: 632 EEYNTTISELRRD--LEKASTKEAATPEAGPPPPPPPPPGGQAGGAPPPPPPPLPGGAAP 689
>SB_15425| Best HMM Match : PAN (HMM E-Value=0.00023)
Length = 514
Score = 27.9 bits (59), Expect = 2.8
Identities = 15/50 (30%), Positives = 21/50 (42%)
Frame = +2
Query: 197 RGWKRSAGSSANAEWRWCTSGLGGLFAGGMPKLRPTGKXAGSTPNGQVRT 346
R WKR+AG + WC GL P+ R + + PN + T
Sbjct: 190 RHWKRTAGDEYKDKDIWCDGGLHETSLAHRPRTRQ--RLKSTVPNELIST 237
>SB_29252| Best HMM Match : Cytadhesin_P30 (HMM E-Value=1.4)
Length = 1439
Score = 27.5 bits (58), Expect = 3.7
Identities = 27/88 (30%), Positives = 33/88 (37%), Gaps = 2/88 (2%)
Frame = -3
Query: 307 PCRP*LWHSPSKQSTEPRGAPPPFCIGGGACTPFPATVPLGTLFTFPGMYGPLLSTVTVF 128
P P +PS P APPP + P P P ++F P P +TVT
Sbjct: 459 PAPPPSVFAPSSGVPTPVAAPPPSVFAPSSGVPTPVAAPPPSVFA-PSSGVP--TTVT-- 513
Query: 127 FNLAPCLIELRSAFL--SSAPPPFLDPP 50
AP S F S P P +PP
Sbjct: 514 ---APPAAPPPSVFAPSSGVPTPVTEPP 538
Score = 27.1 bits (57), Expect = 4.9
Identities = 21/82 (25%), Positives = 31/82 (37%), Gaps = 2/82 (2%)
Frame = -3
Query: 283 SPSKQSTEPRGAPPPFCIGGGACTPFPATVPLGTLFTFPGMYGPLLSTVTVFFNLAPCLI 104
+PS P APPP + P P T P P ++ P T P +
Sbjct: 427 APSSGVPTPVAAPPPSVFASSSGVPTPVTAPPPA--PPPSVFAPSSGVPTPVAAPPPSVF 484
Query: 103 ELRSAFLS--SAPPPFLDPPNT 44
S + +APPP + P++
Sbjct: 485 APSSGVPTPVAAPPPSVFAPSS 506
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 265 TEPRGAPPPFCIGGGACTPFPATVP 191
T P APPP + P PAT P
Sbjct: 557 TAPPPAPPPSVFAPSSAVPTPATAP 581
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 265 TEPRGAPPPFCIGGGACTPFPATVP 191
TEP APPP + P P T P
Sbjct: 535 TEPPPAPPPSVFAPSSGVPTPVTAP 559
>SB_15297| Best HMM Match : RRM_1 (HMM E-Value=2.2e-18)
Length = 291
Score = 27.5 bits (58), Expect = 3.7
Identities = 15/41 (36%), Positives = 17/41 (41%)
Frame = -1
Query: 369 CGXXRGTSVLTWPFGVEPANFPVGRSFGIPPANNPPSPEVH 247
C + T V T P P N PV +F P NP P H
Sbjct: 236 CYSPQPTYVQTLPQSPPPTNSPVTPTFTFPGPVNPTVPTQH 276
>SB_54333| Best HMM Match : Glyco_hydro_39 (HMM E-Value=0)
Length = 1325
Score = 27.5 bits (58), Expect = 3.7
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +1
Query: 127 KRP*QWTKVDHTYQGK 174
K P WT +DH YQGK
Sbjct: 160 KHPIFWTLIDHCYQGK 175
>SB_53466| Best HMM Match : SCP (HMM E-Value=2.4e-27)
Length = 5087
Score = 27.5 bits (58), Expect = 3.7
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +1
Query: 46 CSEDLKKAVEPT--TEMRF*VLLGRALS*KRP*QWTKVDHT 162
C E+++ V+PT TE+ + + R RP QW KVD T
Sbjct: 794 CEEEIQATVKPTVETELSWDEMFERL---DRPLQWEKVDDT 831
>SB_17449| Best HMM Match : DAD (HMM E-Value=1.7)
Length = 414
Score = 27.5 bits (58), Expect = 3.7
Identities = 17/38 (44%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +2
Query: 248 CTSGLG-GLFAGGMPKLRPTGKXAG----STPNGQVRT 346
C GLG GL GG+PKL P S+P VRT
Sbjct: 277 CDLGLGQGLKPGGLPKLSPVSPRKSLSLPSSPGSPVRT 314
>SB_31698| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 468
Score = 27.1 bits (57), Expect = 4.9
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 192 GTVAGNGVQAPPPMQNGGGAPLGSVDCLLGECQSYGLQGNXQVQHQMAKL 341
G++ G+ A P GG AP G LLG + +Q Q Q M +L
Sbjct: 364 GSMGMGGLGAAAP---GGAAPGGGAGGLLGGLKKGKVQSEEQTQRSMERL 410
>SB_2244| Best HMM Match : zf-CCCH (HMM E-Value=0.004)
Length = 445
Score = 27.1 bits (57), Expect = 4.9
Identities = 11/28 (39%), Positives = 16/28 (57%)
Frame = +3
Query: 150 SGPYIPGKVNNVPSGTVAGNGVQAPPPM 233
+GP + G+V P G G G + PPP+
Sbjct: 390 NGPNMRGRVRGGPRGRGRGRGRRNPPPV 417
>SB_42643| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 557
Score = 27.1 bits (57), Expect = 4.9
Identities = 20/77 (25%), Positives = 29/77 (37%)
Frame = +3
Query: 99 SSIRQGAKLKKTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGGAPLGSVDCLL 278
S + +G ++ V D S Y G VP+ + N P P G G+P +
Sbjct: 473 SRLERGLEIPSAVRPDISSMYTHGMYPTVPTSSALLNASAVPVP---GAGSPHPHYHAVQ 529
Query: 279 GECQSYGLQGNXQVQHQ 329
G Y + N Q Q
Sbjct: 530 GANGQYSVPCNCTWQPQ 546
>SB_6364| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 357
Score = 27.1 bits (57), Expect = 4.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 279 PANNPPSPEVHHLHSALAEEPALRFQP 199
P + PP+P HH ++ L++QP
Sbjct: 328 PYHRPPNPSSHHYNNRSKSRQQLQYQP 354
>SB_9672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 183
Score = 26.6 bits (56), Expect = 6.4
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -3
Query: 280 PSKQSTEPRGAPPPFCI 230
P Q EP+ PPPFCI
Sbjct: 114 PIPQYREPQRPPPPFCI 130
>SB_4786| Best HMM Match : VWA (HMM E-Value=3.5e-28)
Length = 444
Score = 26.6 bits (56), Expect = 6.4
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = -3
Query: 160 YGPLLSTVTVFFNLAPCLIELRSAFLSSAPPPFLDPP 50
YGP+L + +N PC+ A+ + P PP
Sbjct: 133 YGPVLQKSNITYNGIPCVGSQFRAYFYNIQVPLASPP 169
>SB_50709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 953
Score = 26.2 bits (55), Expect = 8.5
Identities = 15/45 (33%), Positives = 21/45 (46%)
Frame = -3
Query: 253 GAPPPFCIGGGACTPFPATVPLGTLFTFPGMYGPLLSTVTVFFNL 119
G P FC GAC V G + T G L +T+T+ F++
Sbjct: 299 GGDPTFCSWSGACRVANVRVTCGAMQT--GRKRGLANTLTIDFDI 341
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 26.2 bits (55), Expect = 8.5
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = +3
Query: 129 KTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAP 224
KTV D SGP VPS + GN P
Sbjct: 778 KTVLGDPSGPLAGINATEVPSTIIGGNRTDRP 809
>SB_29408| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 26.2 bits (55), Expect = 8.5
Identities = 16/46 (34%), Positives = 20/46 (43%), Gaps = 1/46 (2%)
Frame = -2
Query: 272 TIHRAQRCTTSILHWRRSLHSVSSHGSAR-YIIHFPWYVWSTFVHC 138
TIH + +H H S+ G AR IH WY ST+ C
Sbjct: 143 TIHTRGMVRSQYIH--AVWHGHSTRGMARSQYIHAVWYGHSTYTRC 186
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 26.2 bits (55), Expect = 8.5
Identities = 11/26 (42%), Positives = 13/26 (50%)
Frame = +2
Query: 278 GGMPKLRPTGKXAGSTPNGQVRTDVP 355
G +P PTG A + PNG V P
Sbjct: 2064 GSVPVTAPTGSVALTAPNGSVALTTP 2089
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,574,398
Number of Sequences: 59808
Number of extensions: 301978
Number of successful extensions: 1113
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 942
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 16,821,457
effective HSP length: 74
effective length of database: 12,395,665
effective search space used: 607387585
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -