Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0413
         (372 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.          23   1.2  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   6.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   6.2  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    20   8.2  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    20   8.2  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                20   8.2  

>AY375535-1|AAQ82648.1|  147|Apis mellifera doublesex protein.
          Length = 147

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 17/66 (25%), Positives = 26/66 (39%)
 Frame = +3

Query: 105 IRQGAKLKKTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQNGGGAPLGSVDCLLGE 284
           +RQ  KLK+ +  DK    +  +V+ +P G          PP    G     S D  +  
Sbjct: 19  MRQNMKLKRHLAQDKVKVRVAEEVDPLPFGVENTISSVPQPPRSLEGSYDSSSGDSPVSS 78

Query: 285 CQSYGL 302
             S G+
Sbjct: 79  HSSNGI 84


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 8/25 (32%), Positives = 14/25 (56%)
 Frame = +1

Query: 184 YLAEPWLETECRLLRQCRMEVVHLW 258
           +++E W+ET   L   C+ E+   W
Sbjct: 343 FVSEYWMETRGFLQPVCQNEMNKWW 367


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 6.2
 Identities = 14/56 (25%), Positives = 22/56 (39%), Gaps = 2/56 (3%)
 Frame = +3

Query: 75   ADDRNALLSSIRQGAKLK--KTVTVDKSGPYIPGKVNNVPSGTVAGNGVQAPPPMQ 236
            +DD+    S++   A     +  T D      P K    P G    NG++ P  M+
Sbjct: 1096 SDDKTKETSTVTAAAAATNIRPGTADNKPQLKPQKPFTSPGGIPGPNGIKMPSFME 1151


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 8/23 (34%), Positives = 14/23 (60%)
 Frame = +3

Query: 126 KKTVTVDKSGPYIPGKVNNVPSG 194
           K T++V++S    PG++   P G
Sbjct: 385 KMTLSVNESNITWPGRLQTKPEG 407


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 7/13 (53%), Positives = 10/13 (76%)
 Frame = -3

Query: 220 ACTPFPATVPLGT 182
           A TP P +VP+G+
Sbjct: 49  AATPTPPSVPVGS 61


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 20.2 bits (40), Expect = 8.2
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -1

Query: 288 GIPPANNPPSPEVHHLHSALAEEP 217
           G P A N P+ E   +     EEP
Sbjct: 46  GTPAAPNMPAEEGEGMAGVTGEEP 69


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 112,784
Number of Sequences: 438
Number of extensions: 3036
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8928360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)