Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0412
         (664 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   2.6  
SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)                 29   3.4  
SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.8  
SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)               28   7.8  

>SB_3702| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 302

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 13/49 (26%), Positives = 24/49 (48%)
 Frame = +1

Query: 103 PALREEQPFRLWVLKHGQLMTSSEVSAGWSHSASSLICSTSYGTHTLSH 249
           PA+  +QP+          +  S+ +  W+ S ++ IC+  YG H + H
Sbjct: 48  PAVYSQQPYYGPPTTQQTFVQVSKAAILWTTSNTTNICTGQYGNHNMDH 96


>SB_42838| Best HMM Match : 7tm_1 (HMM E-Value=9.4e-39)
          Length = 747

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/35 (34%), Positives = 21/35 (60%)
 Frame = +1

Query: 175 VSAGWSHSASSLICSTSYGTHTLSHWAGPLSLRAS 279
           ++ GW HS +  + +T  G HTL++ A P+ L  +
Sbjct: 57  LTEGWCHSVNVRLTATKSGRHTLTN-AAPIKLHVT 90


>SB_32903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 765

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -2

Query: 363 PKITQN*IRASNFPHGLVCPTPNVYIKTGGAE 268
           PK T+  +RA   PH  V   P V   TGG E
Sbjct: 258 PKTTRKPVRAMETPHAEVLIQPKVTGATGGGE 289


>SB_1134| Best HMM Match : DMAP_binding (HMM E-Value=6.4)
          Length = 422

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = -2

Query: 429 FINWIKYNNTKNSRVLLSLHE 367
           F+N +K+N  KN RVL   H+
Sbjct: 385 FVNGLKFNGWKNERVLQEFHD 405


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,641,561
Number of Sequences: 59808
Number of extensions: 381618
Number of successful extensions: 1049
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 983
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1049
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1705624125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)