Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0411
(618 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr... 29 0.54
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 29 0.54
SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation protein... 27 1.6
SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces pomb... 26 5.0
SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subuni... 25 6.6
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 25 8.8
SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 8.8
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 25 8.8
SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces ... 25 8.8
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 25 8.8
>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
2|||Manual
Length = 667
Score = 29.1 bits (62), Expect = 0.54
Identities = 12/51 (23%), Positives = 25/51 (49%)
Frame = +3
Query: 15 SKGFPIIEKDVFAFRQPSNRIGVGSLYGLMVFCTSKLEVCYIEANGFYLGK 167
+ G P I+ + ++ P + + + C+ L VC+ A+G ++GK
Sbjct: 133 ASGIPTIKAILSGYKYPDMNV----FFSIKTLCSKSLAVCFSVASGLWVGK 179
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 29.1 bits (62), Expect = 0.54
Identities = 30/104 (28%), Positives = 47/104 (45%)
Frame = +1
Query: 7 TELPKDSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSE 186
+ L S +S + S S N T A T S +S+ L+ A+ T+S+ + ++ S
Sbjct: 147 SSLASSSTTSSSLASSSTNSTTS---ATPTSSATSSSLSSTAASNSATSSSLASSSLNS- 202
Query: 187 TVTTSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASARTLPS 318
TTS T TS L +A A+ + S ST ++ T S
Sbjct: 203 --TTSATATSSSLSSTAASNSATSSSLASSSLNSTTSATATSSS 244
>SPCC553.01c ||SPCC736.01c|meiotic chromosome segregation
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 715
Score = 27.5 bits (58), Expect = 1.6
Identities = 13/34 (38%), Positives = 17/34 (50%)
Frame = +3
Query: 171 RGLLGDGNNEPYDDFRLPNGKICTSESESVTRTV 272
RG+L D +N DDF L N +I RT+
Sbjct: 38 RGILYDSDNRVVDDFFLNNKRIVLDSEIEFNRTI 71
>SPAC17A5.10 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 224
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/41 (29%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
Frame = +3
Query: 240 TSESESVTRTVWPAAVHRCKRPNT--PITSCTMHPSPPPAN 356
+ + ++ +P A +RPN+ P + TM+ SPPP++
Sbjct: 61 SGSGNAYSQAPYPPARPTSQRPNSWQPGNASTMYASPPPSS 101
>SPBC776.18c |pmh1|mcr1|transcription factor TFIIH complex subunit
Pmh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 318
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/25 (40%), Positives = 13/25 (52%)
Frame = +3
Query: 408 CRLSDKRVFTPSPAQTPLKICTKLV 482
C R+FT PAQ P C K++
Sbjct: 39 CESCVDRIFTTGPAQCPTPGCNKIL 63
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 25.0 bits (52), Expect = 8.8
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +3
Query: 393 HCSWTCRLSDKRVFTPSPAQTPLKICTK 476
H S TC+ +D+ +F P P+ C K
Sbjct: 18 HRSSTCKHNDRELFPIRPKGRPISQCEK 45
>SPBP8B7.26 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 262
Score = 25.0 bits (52), Expect = 8.8
Identities = 16/67 (23%), Positives = 29/67 (43%), Gaps = 3/67 (4%)
Frame = +3
Query: 276 PAAVHRCKRPNTPITSCTMHPSPPPAN-RSSGEYRRXGPCHCSWTCR--LSDKRVFTPSP 446
P+ +++ + P P+ M PPP + SSG Y + + ++T L P P
Sbjct: 130 PSVLNQEQVPPPPVRPNVMSQMPPPPSYSSSGSYSQTYQSNANYTASSPLPTASANAPLP 189
Query: 447 AQTPLKI 467
P ++
Sbjct: 190 VPPPRRV 196
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/28 (50%), Positives = 16/28 (57%)
Frame = +1
Query: 262 RVPSGPQLSTGASARTLPSPAARCIPPP 345
RVP P+LS+ A LPS A IP P
Sbjct: 1010 RVPPVPKLSSKAPPVPLPSADAPPIPVP 1037
>SPAC22G7.01c ||SPAPJ696.03c|aminopeptidase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 598
Score = 25.0 bits (52), Expect = 8.8
Identities = 12/45 (26%), Positives = 23/45 (51%)
Frame = +2
Query: 227 WKDLHFGKRVGNAYRLARSCPQVQAPEHSHHQLHDASLPPACEQV 361
++D HFG RV N + + + ++ L D +L P C+++
Sbjct: 510 YEDGHFGYRVENCVYITEVNTENRFAGRTYLGLKDLTLAPHCQKL 554
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 830
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/57 (22%), Positives = 28/57 (49%)
Frame = +1
Query: 22 DSRSSKRMCSLSVNQATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETV 192
++R+ ++ L + + VL C++ + LNL CA+ + W N A+ + +
Sbjct: 705 NNRAREKSLDLLRSDSGTQVLL-CSLKCGALGLNLTCASRVILCDVWWNPAIEEQAI 760
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,449,627
Number of Sequences: 5004
Number of extensions: 48532
Number of successful extensions: 283
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 283
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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