Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0411
         (618 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)              40   0.002
SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.080
SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.99 
SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)                   31   0.99 
SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)                     29   2.3  
SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)               29   3.0  
SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.3  
SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.0  
SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)                    28   7.0  
SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.2  
SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)                27   9.2  

>SB_32701| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 62

 Score = 39.9 bits (89), Expect = 0.002
 Identities = 18/51 (35%), Positives = 31/51 (60%)
 Frame = +3

Query: 102 MVFCTSKLEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESE 254
           +V+ +++++V    AN F   +LRGL GD N E YD+F+ P G+   +  +
Sbjct: 6   VVYMSNRIQV---HANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQ 53


>SB_14316| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1472

 Score = 39.5 bits (88), Expect = 0.002
 Identities = 16/39 (41%), Positives = 23/39 (58%)
 Frame = +3

Query: 138  IEANGFYLGKLRGLLGDGNNEPYDDFRLPNGKICTSESE 254
            + AN F   +LRGL GD N E YD+F+ P G+   +  +
Sbjct: 1425 VHANPFLQNRLRGLCGDMNGEQYDEFQSPTGEFLNNADQ 1463


>SB_42045| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 356

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 27/86 (31%), Positives = 33/86 (38%)
 Frame = +3

Query: 156 YLGKLRGLLGDGNNEPYDDFRLPNGKICTSESESVTRTVWPAAVHRCKRPNTPITSCTMH 335
           Y G   GL G+ N  P DDF + NG+   S+ E      W    HR +RP      C   
Sbjct: 176 YRGNTCGLCGNFNGVPSDDFMMKNGRYARSDRE--FGKSWSLGGHR-RRP------CLQR 226

Query: 336 PSPPPANRSSGEYRRXGPCHCSWTCR 413
              PP      + RR    H  W  R
Sbjct: 227 APSPPIAEPISKCRRSALHH--WRAR 250


>SB_42849| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 113

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 174 GLLGDGNNEPYDDFRLPNGKICTSESESV 260
           GLLG  NNE +D+   PNGK   S  E V
Sbjct: 63  GLLGTNNNEHHDEMTKPNGKHAGSLIEFV 91


>SB_40683| Best HMM Match : VWD (HMM E-Value=2.4e-05)
          Length = 2200

 Score = 30.7 bits (66), Expect = 0.99
 Identities = 15/29 (51%), Positives = 17/29 (58%)
 Frame = +3

Query: 174  GLLGDGNNEPYDDFRLPNGKICTSESESV 260
            GLLG  NNE +D+   PNGK   S  E V
Sbjct: 1811 GLLGTNNNEHHDEMTKPNGKHAGSLIEFV 1839


>SB_27645| Best HMM Match : VWD (HMM E-Value=0.016)
          Length = 237

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = +3

Query: 123 LEVCYIEANGFYLGKLRGLLGDGNNEPYDDFRLPNGK 233
           L V +     FY G   GL GD +N P +DF  P G+
Sbjct: 187 LNVLFTPTAAFY-GNTGGLCGDMDNNPANDFTGPTGE 222


>SB_34189| Best HMM Match : MAM (HMM E-Value=5.60519e-45)
          Length = 649

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 22/91 (24%), Positives = 35/91 (38%)
 Frame = +1

Query: 151 ASTWVNFAVFSETVTTSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASARTLPSPAAR 330
           A+T ++ +    T T+S + T       ++  KA+     S  + +T  +     SPAA 
Sbjct: 458 ATTTLSTSTTKATTTSSTSTTKATTTLSTSTTKATTTPSTSTTKATTSTAVEATTSPAAT 517

Query: 331 CIPPPRLRTGLXGNIAAXDPVIVHGHVAFQT 423
              PP        N A   P I+     F T
Sbjct: 518 ETAPPTTTESRSTNKATTIPTIIDDFCDFST 548


>SB_17079| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2537

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = +3

Query: 168  LRGLLGDGNNEPYDDFRLPNGKICTSESESVTRTVWPA 281
            L+ + G  ++EP DD R  N  I +SES +++    PA
Sbjct: 1705 LKIVRGSAHDEPPDDSRSDNDSIMSSESGTISDMCLPA 1742


>SB_48608| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 321

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 8/64 (12%)
 Frame = +3

Query: 288 HRCKRPNTPITSCTMHPSPP------PANRSSGEYRRXGPCHCSWTCRLSDKRVFT--PS 443
           H+   PNTP  + T  P+PP      P N ++    R    H +W    SD+ + +  PS
Sbjct: 236 HQLLFPNTPTATPTTTPTPPAIPFITPFNHNTSTIPRI--LHANWEIISSDQELSSIFPS 293

Query: 444 PAQT 455
           P  T
Sbjct: 294 PPTT 297


>SB_25952| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 195

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 26/106 (24%), Positives = 38/106 (35%), Gaps = 5/106 (4%)
 Frame = +3

Query: 237 CTSESESVTR-TVWPAAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRXG--PCHCSWT 407
           CT+   S T  T   +  H     +TP  +CT   +  P+  S+  Y       C  S+T
Sbjct: 4   CTTSYTSTTSYTHTTSYTHTTSYTSTPSYTCTTSYTSTPSYTSTTSYTPTPSYTCTTSYT 63

Query: 408 CRLS--DKRVFTPSPAQTPLKICTKLVIWDEEXXLCPDRPXPCRTS 539
              S      +TP+ + TP    T    +       P     C TS
Sbjct: 64  STTSYTSTTSYTPTTSYTPTTSYTPTTSYTPTPSYTPTPSYTCTTS 109


>SB_8332| Best HMM Match : PDZ (HMM E-Value=1.3e-17)
          Length = 1038

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 19/49 (38%), Positives = 22/49 (44%)
 Frame = -1

Query: 474 SCKSLAASVPVTA*IHACLKGDMSMNNDRVLSGDIPXKTCSQAGGRDAS 328
           S KSLA S+P T     C KG     NDR  S +    +C     RD S
Sbjct: 359 SLKSLAESLPGTINESVCAKGPF---NDRWSSDEYDSMSCKSQYPRDGS 404


>SB_52232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 929

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 14/50 (28%), Positives = 20/50 (40%), Gaps = 1/50 (2%)
 Frame = +3

Query: 231 KICTSESESVTRTVWPAAVHRCKRPNTPITSCTMH-PSPPPANRSSGEYR 377
           + C  + +    T + A  HRCK  N     CT   P P    +  G +R
Sbjct: 125 RFCGLQHDRGNCTAYNATCHRCKEKNHFARCCTRKLPQPQAHQQQRGAFR 174


>SB_43930| Best HMM Match : ANF_receptor (HMM E-Value=0)
          Length = 915

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 300 RPNTPITSCTMHPSPPPANRSSGEYRRXGPCHCSWTCRLSDKRVFTPSPAQTPLKIC 470
           R  TP++ C    +P       G+Y   G   C WTC      +  PS  Q   K C
Sbjct: 514 RNETPVSRCNDICAP-------GQYPVNGSTRCCWTCVPCPAGLIKPSRGQDGCKGC 563


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,460,899
Number of Sequences: 59808
Number of extensions: 436535
Number of successful extensions: 1520
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1379
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1517
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)