Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0411
         (618 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical ...    34   0.093
AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical ...    31   0.87 
Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical pr...    30   1.2  
U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical p...    29   2.7  
AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synapt...    29   2.7  
AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical ...    29   2.7  
U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated p...    27   8.1  
U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated p...    27   8.1  
AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage ...    27   8.1  

>AF040647-2|AAB94995.3|  299|Caenorhabditis elegans Hypothetical
           protein F54D12.5 protein.
          Length = 299

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 22/52 (42%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 193 TTSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASA-RTLPSPAARCIPPP 345
           T+S +MT+    E SA   A    + SG   ST ASA  T  S   RC PPP
Sbjct: 56  TSSSSMTASAASEVSAALSAMNRDISSGSGSSTAASATATTSSKLPRCTPPP 107


>AC006671-6|AAF39916.1|  411|Caenorhabditis elegans Hypothetical
           protein K08A2.1 protein.
          Length = 411

 Score = 30.7 bits (66), Expect = 0.87
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +1

Query: 265 VPSGPQLSTGASARTLPSPAARCIPPPRLRTGLXGNIAAXDPVI 396
           VP+ P +++ + A   PSP A   PPPRL           +PV+
Sbjct: 262 VPTAPDVTSESPATPQPSPPAVTPPPPRLLPAATTESHQTEPVL 305


>Z29560-5|CAA82664.1| 1385|Caenorhabditis elegans Hypothetical protein
            K03H1.5 protein.
          Length = 1385

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 174  GLLGDGNNEPYDDFRLPNGKICTSESESVT 263
            GLLG  NN+P DD   P+G +   ++ + T
Sbjct: 1036 GLLGTYNNDPADDLTTPSGTVTRVQNPTTT 1065


>U39999-14|ABF71722.1| 1483|Caenorhabditis elegans Hypothetical
           protein F41G3.12 protein.
          Length = 1483

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 391 QGPXRRYSP-EDLFAGGGEGCIVQLVMGV 308
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 209 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 237


>AM773423-1|CAO78927.1| 1473|Caenorhabditis elegans AGRin (synaptic
           protein) homologfamily member protein.
          Length = 1473

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 12/29 (41%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -3

Query: 391 QGPXRRYSP-EDLFAGGGEGCIVQLVMGV 308
           +GP ++ +P EDL  G GE C+V  + G+
Sbjct: 217 KGPCKKRNPCEDLRCGPGEDCVVNQINGI 245


>AC006669-1|AAF39909.1| 1203|Caenorhabditis elegans Hypothetical
           protein H43E16.1 protein.
          Length = 1203

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 27/101 (26%), Positives = 48/101 (47%), Gaps = 3/101 (2%)
 Frame = +1

Query: 25  SRSSKRMCSLSVNQATESVLAHCT--VSWSSAHLNLRCATLKLTASTWVNF-AVFSETVT 195
           S SSK + S    Q + S ++  T  VS +S  +    A+L+ T ++  +    F+ T T
Sbjct: 398 SSSSKTLTSTQTTQGSPSTVSQTTPGVSSASTGMTTSQASLRSTQNSVTSTPGSFTVTST 457

Query: 196 TSLTMTSGYLMERSALRKASR*RVPSGPQLSTGASARTLPS 318
            ++T T G +   S+    S  +  S   ++T AS+   P+
Sbjct: 458 PTITSTQGAMASSSSNSPTST-QAISSSTVTTVASSTIAPT 497


>U55374-6|AAM69092.1| 1926|Caenorhabditis elegans Uncoordinated
            protein 2, isoform c protein.
          Length = 1926

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 262  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 357
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1631 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1661


>U55374-5|AAP82640.2| 2027|Caenorhabditis elegans Uncoordinated
            protein 2, isoform b protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 262  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 357
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762


>AY264781-1|AAP13107.1| 2027|Caenorhabditis elegans high voltage
            activated calciumchannel alpha-1 subunit protein.
          Length = 2027

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 16/32 (50%), Positives = 18/32 (56%)
 Frame = +1

Query: 262  RVPSGPQLSTGASARTLPSPAARCIPPPRLRT 357
            R PS P+  + A A   PSPA R   PPR RT
Sbjct: 1732 RSPSSPRYRSMARASP-PSPAERYGHPPRYRT 1762


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,034,336
Number of Sequences: 27780
Number of extensions: 305935
Number of successful extensions: 1081
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1079
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)