Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0411
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g43970.2 68415.m05468 La domain-containing protein contains P...    31   0.46 
At2g43970.1 68415.m05467 La domain-containing protein contains P...    31   0.46 
At1g79800.1 68414.m09316 plastocyanin-like domain-containing pro...    31   0.46 
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family...    29   3.3  
At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family...    29   3.3  
At4g29540.1 68417.m04213 bacterial transferase hexapeptide repea...    28   5.7  
At3g16730.1 68416.m02136 expressed protein ; expression supporte...    28   5.7  
At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family...    28   5.7  
At4g00060.1 68417.m00006 nucleotidyltransferase family protein c...    27   7.5  
At1g30170.1 68414.m03688 hypothetical protein contains Pfam prof...    27   7.5  
At5g46820.1 68418.m05768 hypothetical protein contains similarit...    27   10.0 
At5g42840.1 68418.m05221 DC1 domain-containing protein contains ...    27   10.0 
At5g03310.1 68418.m00282 auxin-responsive family protein similar...    27   10.0 
At5g02420.1 68418.m00165 expressed protein                             27   10.0 
At3g53330.1 68416.m05884 plastocyanin-like domain-containing pro...    27   10.0 
At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing ...    27   10.0 
At1g22890.1 68414.m02859 expressed protein                             27   10.0 

>At2g43970.2 68415.m05468 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 529

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 181 SETVTTSLTMTSGYLMERSALRKASR*RVPSG-PQLSTGASARTLPSPAARCIPPP 345
           S + +TS T ++    + S LR  S  R+ +G P+   G +   LP P    IPPP
Sbjct: 21  SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPPLPQPPRMIIPPP 76


>At2g43970.1 68415.m05467 La domain-containing protein contains Pfam
           profile PF05383: La domain
          Length = 545

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 181 SETVTTSLTMTSGYLMERSALRKASR*RVPSG-PQLSTGASARTLPSPAARCIPPP 345
           S + +TS T ++    + S LR  S  R+ +G P+   G +   LP P    IPPP
Sbjct: 21  SHSHSTSSTTSASSSSDPSLLRSLSLSRLNAGAPEFVPGRTTPPLPQPPRMIIPPP 76


>At1g79800.1 68414.m09316 plastocyanin-like domain-containing
           protein
          Length = 192

 Score = 31.5 bits (68), Expect = 0.46
 Identities = 15/42 (35%), Positives = 20/42 (47%)
 Frame = +2

Query: 308 HSHHQLHDASLPPACEQVFXGISPLRTLSLFMDMSPFRQACI 433
           H HH  HDAS+PP+   +    SP  + S     S    AC+
Sbjct: 136 HQHHD-HDASMPPSMSPLSNSASPYASASASSAASSLPTACL 176


>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 162

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/24 (45%), Positives = 14/24 (58%)
 Frame = +3

Query: 303 PNTPITSCTMHPSPPPANRSSGEY 374
           P+TP T+C   PSPP +   S  Y
Sbjct: 58  PSTPTTACPPPPSPPSSGGGSSYY 81


>At4g16790.1 68417.m02536 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 473

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 16/47 (34%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +3

Query: 219 LPNGK-ICTSESESVTRTVWPAAVHRCKRPNTPITSCT--MHPSPPP 350
           LP+ K + T ES+ + + + P +     R + PI +     HPSPPP
Sbjct: 238 LPSVKNLTTVESQPLIKNLTPPSSFSSPRKSNPIPNLASEFHPSPPP 284


>At4g29540.1 68417.m04213 bacterial transferase hexapeptide
           repeat-containing protein similar to
           UDP-acetylglucosamine acyltransferase [Acinetobacter sp.
           M-1] GI:13358850; contains Pfam profile PF00132:
           Bacterial transferase hexapeptide (three repeats)
          Length = 334

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/39 (28%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
 Frame = +3

Query: 324 CTMHPSPPPANRSS-GEYRRX-GPCHCSWTCRLSDKRVF 434
           C++H S  P++++  G+     G CH +  C++ D+ +F
Sbjct: 152 CSIHRSSKPSDKTVIGDNNLIMGSCHIAHDCKIGDRNIF 190


>At3g16730.1 68416.m02136 expressed protein ; expression supported
           by MPSS
          Length = 695

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 297 KRPNTPITSCTMHPSPPPANRSS 365
           KR  +PIT    H SPPP  R++
Sbjct: 618 KRAKSPITKGKSHESPPPKKRNT 640


>At3g06750.1 68416.m00800 hydroxyproline-rich glycoprotein family
           protein contains proline-rich extensin domains,
           INTERPRO:IPR002965
          Length = 147

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = +3

Query: 234 ICTSESESVTRTVWPAAVHRCKRPNTPITSCTMHPSPPPANRSSG 368
           + TS+ E+V+ T+  +    C  P  P+ S    P PPP++   G
Sbjct: 22  LVTSKDETVSCTMCSS----CDNPCNPVPSSYSPPPPPPSSSGGG 62


>At4g00060.1 68417.m00006 nucleotidyltransferase family protein
           contains Pfam profile: PF01909 nucleotidyltransferase
           domain
          Length = 839

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +3

Query: 291 RCKRPNTPITSCTMH-PSPPPANRSSGEYRRXG 386
           R KRP +P+  C    P PPP +  S    R G
Sbjct: 335 RIKRPPSPVVLCVPRAPRPPPPSPVSNSRARRG 367


>At1g30170.1 68414.m03688 hypothetical protein contains Pfam profile
           PF03478: Protein of unknown function (DUF295)
          Length = 366

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 14/38 (36%), Positives = 19/38 (50%)
 Frame = +3

Query: 402 WTCRLSDKRVFTPSPAQTPLKICTKLVIWDEEXXLCPD 515
           W C+ S+ ++ T  P   PL  C   VIW+     CPD
Sbjct: 102 WACK-SNPKLLTLPPLN-PLFSCQTDVIWNVAMSSCPD 137


>At5g46820.1 68418.m05768 hypothetical protein contains similarity
           to carboxyl-terminal proteinase contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 352

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -1

Query: 426 ACLKGDMSMNNDRVLSGDIPXKTCSQ 349
           A L GD S N++ V   DIP + C Q
Sbjct: 47  AMLSGDTSANDEMVAEFDIPEEGCPQ 72


>At5g42840.1 68418.m05221 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 671

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 15/43 (34%), Positives = 22/43 (51%)
 Frame = +1

Query: 67  ATESVLAHCTVSWSSAHLNLRCATLKLTASTWVNFAVFSETVT 195
           AT ++L HC +     +LN+RCA  + T     N  V   T+T
Sbjct: 201 ATGNLLYHCDIC--KFNLNMRCAIREPTPVALSNMKVHEHTLT 241


>At5g03310.1 68418.m00282 auxin-responsive family protein similar to
           indole-3-acetic acid induced protein ARG7 (SP:P32295)
           [Vigna radiata]
          Length = 114

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 11/30 (36%), Positives = 17/30 (56%)
 Frame = +3

Query: 171 RGLLGDGNNEPYDDFRLPNGKICTSESESV 260
           R LL    +E YDDF   + K+C +  E++
Sbjct: 71  RALLDQSKDEAYDDFTSGDSKLCIACDETL 100


>At5g02420.1 68418.m00165 expressed protein
          Length = 115

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 13/31 (41%), Positives = 14/31 (45%)
 Frame = +3

Query: 297 KRPNTPITSCTMHPSPPPANRSSGEYRRXGP 389
           K P    T C   P  P  NRSSG  R+  P
Sbjct: 53  KIPEVKYTLCPPAPRKPKPNRSSGTKRKLTP 83


>At3g53330.1 68416.m05884 plastocyanin-like domain-containing
           protein similar to mavicyanin SP:P80728 from [Cucurbita
           pepo]
          Length = 310

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 14/38 (36%), Positives = 18/38 (47%)
 Frame = +3

Query: 276 PAAVHRCKRPNTPITSCTMHPSPPPANRSSGEYRRXGP 389
           P+  H   RPNTP       P PPP +++    RR  P
Sbjct: 143 PSKTHEPSRPNTP-------PPPPPPSKTHEPSRRITP 173


>At2g44710.1 68415.m05564 RNA recognition motif (RRM)-containing
           protein 
          Length = 809

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 18/32 (56%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +1

Query: 253 SR*RVPSGPQLSTGASARTLPSPA-ARCIPPP 345
           SR R P  P L   A AR LP PA AR +PPP
Sbjct: 534 SRGRRPR-PPLPPPARARPLPPPARARPMPPP 564


>At1g22890.1 68414.m02859 expressed protein 
          Length = 73

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +3

Query: 324 CTMHPSPPPANRS 362
           C  HPSPPP +RS
Sbjct: 43  CVSHPSPPPPHRS 55


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,305,946
Number of Sequences: 28952
Number of extensions: 286336
Number of successful extensions: 952
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 947
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)