Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0410
         (697 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase |Schizosaccha...    28   1.1  
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    27   2.6  
SPCC191.09c |gst1||glutathione S-transferase Gst1|Schizosaccharo...    25   7.8  
SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual    25   7.8  

>SPCC4B3.05c |hem12||uroporphyrinogen decarboxylase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 355

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 370 RQHLKKKNRSQYINLKFAKGLGFQYD 447
           +QHLKKK R +   + FAKG  +  D
Sbjct: 234 KQHLKKKKRDEVPMIVFAKGAWYAID 259


>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -2

Query: 351 IIGLNKSISNFKVQYSAVVNKV-ASFCHTIYGFRQLNDYNLLKS 223
           I+G N+S S+F++ Y    +KV  S  H    F   + YNLL S
Sbjct: 170 IVGDNRSPSSFRLHYMVAPDKVDESKVHIPSLFVSTSSYNLLWS 213


>SPCC191.09c |gst1||glutathione S-transferase
           Gst1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 229

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = +2

Query: 257 NPYIVWQNDATLLTTAEYWTLKFEIDLFNPIIHANY 364
           N Y +W++DA L+  A+ +  + +I L  P  H  Y
Sbjct: 64  NDYTIWESDAILIYLADKYDTERKISL--PRDHPEY 97


>SPAPB2B4.01c |gpi12||pig-L|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 248

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 7/25 (28%), Positives = 15/25 (60%)
 Frame = +2

Query: 461 HTNRLFWEVMAWLYLMRYVHQRLLR 535
           H +++ W    W+YL +Y+   +L+
Sbjct: 221 HKSQMVWFRYGWIYLSKYMSNNVLK 245


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,729,047
Number of Sequences: 5004
Number of extensions: 53916
Number of successful extensions: 98
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)