Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0410
         (697 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24)                 32   0.51 
SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)                 32   0.51 
SB_34075| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.51 
SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29)                   29   3.6  
SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)              28   6.3  

>SB_58180| Best HMM Match : zf-C2H2 (HMM E-Value=1e-24)
          Length = 201

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 524 FDERIALNI-TTPLLPKKGDSCVWLSQSY*XPNPLANFKFIYCD 396
           F++R AL+I   PL+P +   C + S+S+  PN L N   ++ +
Sbjct: 98  FNQRSALHIHVCPLVPNRPYHCGYCSESFSNPNELRNHSIVHAN 141


>SB_58178| Best HMM Match : UBACT (HMM E-Value=1.7e-34)
          Length = 1236

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
 Frame = -3

Query: 524  FDERIALNI-TTPLLPKKGDSCVWLSQSY*XPNPLANFKFIYCD 396
            F++R AL+I   PL+P +   C + S+S+  PN L N   ++ +
Sbjct: 1111 FNQRSALHIHVCPLVPNRPYHCGYCSESFSNPNELRNHSIVHAN 1154


>SB_34075| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 79

 Score = 31.9 bits (69), Expect = 0.51
 Identities = 18/52 (34%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
 Frame = -2

Query: 339 NKSISNFKVQYSAVVN-KVASFCHTIYGFRQLNDYNLLKSLNVDIWMSLDDS 187
           NK+ S FK  +   V+ K+A+  H+ Y  R   DY L  S     W + D S
Sbjct: 24  NKACSKFKGNFIGNVSQKIATSIHSFYLLRITADYKLPTSFETIAWATCDQS 75


>SB_17686| Best HMM Match : Ank (HMM E-Value=3.2e-29)
          Length = 761

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = -2

Query: 228 KSLNVDIWMSLDDSIINMARFYLRT*LKKNIKADFGNGGIYFFFF 94
           +S N+  W+ +  +++ +A ++L     ++I  D  NGG YF+ F
Sbjct: 433 ESSNIADWLLIVFTLLYLAPYFLSAEQLESITGDARNGGQYFWSF 477


>SB_59678| Best HMM Match : Lectin_C (HMM E-Value=3.3e-19)
          Length = 951

 Score = 28.3 bits (60), Expect = 6.3
 Identities = 15/27 (55%), Positives = 17/27 (62%)
 Frame = +1

Query: 91  PKKKKIYPAISKVGLDIFFKLGP*VKP 171
           PK+ K  P   KVG+DI  K GP VKP
Sbjct: 341 PKEDKSSP---KVGVDIIVKFGPGVKP 364


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,898,763
Number of Sequences: 59808
Number of extensions: 346951
Number of successful extensions: 569
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 532
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)