Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0410
         (697 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g40380.1 68415.m04979 prenylated rab acceptor (PRA1) family p...    29   3.9  
At3g20680.1 68416.m02617 expressed protein                             28   6.8  
At2g36190.1 68415.m04442 beta-fructosidase, putative / beta-fruc...    28   6.8  
At1g80310.1 68414.m09402 expressed protein                             27   9.0  

>At2g40380.1 68415.m04979 prenylated rab acceptor (PRA1) family
           protein contains Pfam profile PF03208: Prenylated rab
           acceptor (PRA1)
          Length = 213

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 18/61 (29%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
 Frame = -2

Query: 342 LNKSISNFKVQYSAVVNKVASFCHTIYGFRQLNDYNLLKS-LNVDIWMSLDDSIINMARF 166
           + K+++ FKV YSA+V+ V +F    + F  L   +LL S + + ++ S D  ++   R 
Sbjct: 71  IRKNLAYFKVNYSAIVSLVLAFSLLSHPFSLLVLLSLLGSWMFLYLFRSSDQPLVLFGRS 130

Query: 165 Y 163
           +
Sbjct: 131 F 131


>At3g20680.1 68416.m02617 expressed protein
          Length = 338

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 23/70 (32%), Positives = 34/70 (48%)
 Frame = +1

Query: 397 SQYINLKFAKGLGFQYD*LNQTHESPFLGSNGVVIFNAIRSSKTTPLSQFPAVYVLKLRI 576
           S+  +L F+K L  Q+  LN    +  L +       +  SS + PLS+  A+   K  +
Sbjct: 29  SRIFHLHFSKSLSQQHSKLNHKSTTTRLFAPLCSSLPS-PSSSSPPLSKEEAINQAKTCL 87

Query: 577 LPLLIKGLNN 606
           L  LIK LNN
Sbjct: 88  LSCLIKPLNN 97


>At2g36190.1 68415.m04442 beta-fructosidase, putative /
           beta-fructofuranosidase, putative similar to
           beta-fructofuranosidase GI:18324 from [Daucus carota]
          Length = 591

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = -3

Query: 158 GPNLKKISRPTLEMAGYIFFFFGKMKIRFVRYV 60
           GPN K + + +L++  Y ++  GK  ++  RY+
Sbjct: 264 GPNTKHVLKVSLDITRYEYYTLGKYDLKKDRYI 296


>At1g80310.1 68414.m09402 expressed protein
          Length = 464

 Score = 27.5 bits (58), Expect = 9.0
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -3

Query: 497 TTPLLPKKGDSCVWLSQSY*XPNPLAN 417
           TTPLLP     C WL +     NPL++
Sbjct: 5   TTPLLPGDRSRCGWLRRRLRLKNPLSS 31


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,663,347
Number of Sequences: 28952
Number of extensions: 260782
Number of successful extensions: 491
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 491
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1487069504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)