Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl...    27   2.0  
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c...    26   4.6  
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   8.1  
SPAC12B10.07 |acp1||F-actin capping protein alpha subunit|Schizo...    25   8.1  

>SPCC830.05c |epl1||histone acetyltransferase complex subunit Epl1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 557

 Score = 27.5 bits (58), Expect = 2.0
 Identities = 17/58 (29%), Positives = 21/58 (36%)
 Frame = -2

Query: 521 NSMEVPSDCPPIPLVITARALSVPRQ*LPNNHIIAE*ILQYNNQKYMYQSLWIRSNAI 348
           N + +PS  P  PL       S P   L N +         NN  Y Y +L    N I
Sbjct: 427 NQLSIPSSTPSTPLSDNGPTYSTPHSSLSNFNTCDSLSFSSNNSLYGYSTLLHPRNPI 484


>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 4.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +2

Query: 497 SRLEPPSSSHASQENATVSSHETRXGFSEKTLV 595
           SR  P SSS  + E      HE R G S ++L+
Sbjct: 12  SRRSPSSSSIGTNETDHTGFHEKRQGASSESLI 44


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = -1

Query: 201 KNVRFQFINRNSGPTSHR 148
           KN+  Q+I R+  PTSHR
Sbjct: 89  KNIPDQYIGRSPRPTSHR 106


>SPAC12B10.07 |acp1||F-actin capping protein alpha
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 256

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 228 NVHRYTRAHTMRHDLVHFIRHTSSDHY 308
           NV  YT A  +  ++V  I+  +SDHY
Sbjct: 92  NVEDYTEAIKIPDEIVKQIKKVASDHY 118


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,025,719
Number of Sequences: 5004
Number of extensions: 62840
Number of successful extensions: 126
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)