Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606     29   2.8  
06_03_1114 + 27719099-27719252,27719340-27719570,27720508-277211...    29   4.8  
06_03_1108 - 27661916-27662812,27662889-27663529,27663613-276645...    29   4.8  
01_01_0687 - 5262849-5262870,5262935-5263094,5263197-5263318,526...    28   6.4  
07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,114...    28   8.4  

>02_02_0456 + 10489544-10491064,10491506-10491632,10491633-10492606
          Length = 873

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +1

Query: 172 SVDKLKSDVFWDFNRMC 222
           ++D LK D+FWDF ++C
Sbjct: 361 TLDGLKDDIFWDFFKLC 377


>06_03_1114 +
           27719099-27719252,27719340-27719570,27720508-27721148,
           27721225-27722124
          Length = 641

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 664 KFLFGPPIMAWPVLDPGAITILLY 593
           +FL G  ++  PVL+PGA T+  Y
Sbjct: 421 QFLLGRGVLVSPVLEPGATTVTAY 444


>06_03_1108 -
           27661916-27662812,27662889-27663529,27663613-27664592,
           27664854-27664934,27668582-27668634,27669294-27669308,
           27670069-27670296
          Length = 964

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 664 KFLFGPPIMAWPVLDPGAITILLY 593
           +FL G  ++  PVL+PGA T+  Y
Sbjct: 745 QFLLGRGVLVSPVLEPGATTVTAY 768


>01_01_0687 -
           5262849-5262870,5262935-5263094,5263197-5263318,
           5263415-5263536,5263908-5264028,5264076-5264152,
           5264650-5264671,5264777-5265102
          Length = 323

 Score = 28.3 bits (60), Expect = 6.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +1

Query: 394 LLYCKIYSAIIWLFGNHCRGTDKARAVITSGIGGQSL 504
           LL   +   ++ L G+ C G  + RAVI +GI G  L
Sbjct: 88  LLLAGVPGLVLCLCGSGCFGISEGRAVIKAGIEGMML 124


>07_01_0162 + 1138420-1138640,1138788-1138830,1139449-1140971,
            1141770-1142063,1142145-1142337,1142624-1142694,
            1142781-1144200
          Length = 1254

 Score = 27.9 bits (59), Expect = 8.4
 Identities = 8/28 (28%), Positives = 19/28 (67%)
 Frame = +3

Query: 309  CEGRI*SLEQISIDGVTSYPERLVHIFL 392
            C G+  S + + + G T++PE+++ +F+
Sbjct: 1087 CHGQSRSSDMVELSGTTTFPEQVIKLFV 1114


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,017,779
Number of Sequences: 37544
Number of extensions: 421627
Number of successful extensions: 1012
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 985
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1839213168
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)