Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)           34   0.13 
SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_14190| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.5  
SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)                    28   6.5  
SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  
SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)                   28   8.6  
SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.6  

>SB_41561| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.28)
          Length = 1643

 Score = 33.9 bits (74), Expect = 0.13
 Identities = 20/60 (33%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -1

Query: 537 SCDAXELDGGSKRLPADTAGYHGTSLISSTAVIAEQPYNRRIDF-TV*QPKIYVPIALDT 361
           +CD    DG ++RL  DT    GT+   +   + +   NRR+ F TV Q   Y  +  DT
Sbjct: 689 TCDTVLQDGSNRRLTCDTVLQEGTNRRLTCDTVLQCGTNRRLTFDTVLQDSTYRRLTFDT 748



 Score = 28.7 bits (61), Expect = 4.9
 Identities = 14/51 (27%), Positives = 23/51 (45%)
 Frame = -1

Query: 564 VSCDDTVAFSCDAXELDGGSKRLPADTAGYHGTSLISSTAVIAEQPYNRRI 412
           + C      +CD    DG ++RL  DT    GT+   +   + +   NRR+
Sbjct: 652 LQCSTNRRLTCDTVLQDGTNRRLTCDTVLQGGTNRRLTCDTVLQDGSNRRL 702


>SB_51107| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 466

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = -3

Query: 646 PIMAWPVLDPGAITILLYEGLLAKAXTCFVR*YCCVFLRRV 524
           P M  P  D   +T+ L E     A  C V+ YCC+FL RV
Sbjct: 269 PHMQAPEEDDFWVTVSLNE----TAVGCLVQYYCCIFLGRV 305


>SB_14190| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 1/29 (3%)
 Frame = -1

Query: 126 WLRAISCS-LRIAFQTGTSAALSVGLLHP 43
           WL AISCS L I+     S A+ +G +HP
Sbjct: 7   WLPAISCSLLLISIVVSYSCAVGLGQVHP 35


>SB_25408| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1636

 Score = 28.3 bits (60), Expect = 6.5
 Identities = 19/63 (30%), Positives = 31/63 (49%)
 Frame = -2

Query: 647 SNHGVAGARSGRHYYSLVRGSSR*SXYVFRAMILLRFLATRXNSMEVPSDCPPIPLVITA 468
           +N G+    SG H  S   G  + +   + AM + +FL +R + + + S    +PLV T 
Sbjct: 735 NNLGIFSGASGLHSTSRRNGGLQLAIQRWYAMFVKKFLHSRRHKLSIISQL-LLPLVFTL 793

Query: 467 RAL 459
            AL
Sbjct: 794 MAL 796


>SB_34510| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1845

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = -1

Query: 534  CDAXELDGGSKRLPADTAGYHGTSLISSTAVIAE 433
            CD  ++DG S  +P D   YH    I   +V+ +
Sbjct: 908  CDKMDVDGPSHNMPHDEQHYHKQEAILDESVVVK 941


>SB_14341| Best HMM Match : DUF1339 (HMM E-Value=4.4)
          Length = 801

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/46 (28%), Positives = 21/46 (45%)
 Frame = +1

Query: 412 YSAIIWLFGNHCRGTDKARAVITSGIGGQSLGTSIEFXRVARKRNS 549
           Y +  W+ GN   G    RA   +G+G   LG+ +   +  R+  S
Sbjct: 37  YESAFWVQGNPTFGYQGPRATSQTGLGTPKLGSKLSVGKRRRQAES 82


>SB_14192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 261

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = -1

Query: 126 WLRAISCSLRI-AFQTGTSAALSVGLLHP 43
           WL AISCSL + +     S A+++G +HP
Sbjct: 7   WLPAISCSLLLTSIVVSYSCAVALGQVHP 35


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,469,710
Number of Sequences: 59808
Number of extensions: 497105
Number of successful extensions: 1333
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1210
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1877743452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)