Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical pr...    29   3.3  
AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormo...    28   7.6  
AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical ...    28   7.6  
AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z81494-4|CAB04050.2|  319|Caenorhabditis elegans Hypothetical
           protein F02E9.3 protein.
          Length = 319

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)
 Frame = -1

Query: 237 GERFNTHSIKVPKNVRFQFINRNSGPTSHREHDTAGVW--LRAISCSLRIAFQTGTSAAL 64
           G+R  + +I V K  ++   NR    T + + +T  +   L+ ++C +R  FQ GT+   
Sbjct: 88  GKRMTSRAIHVSK--KWSQFNRREDKTDYLDDETMQILEDLKILNCKIRKRFQIGTTCPH 145

Query: 63  SV 58
           S+
Sbjct: 146 SL 147


>AF045635-1|AAU87830.1|  480|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 76 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
 Frame = +1

Query: 196 VFWDFNRMCI-ETFTAIHGRTLCATI*CIL*GTHLLITTAKEEFSHSSRSQL-MALLRIQ 369
           + +D  R C+ E  +A+    +  T  C L    LL  TA +  S +SR+ + MA  R+ 
Sbjct: 359 LLYDPLRSCLNELGSALEHSRMTDTEFCALFAI-LLFNTAADNLSDASRNAVVMARNRVM 417

Query: 370 SDWYIYF 390
            DW+ ++
Sbjct: 418 KDWFEFY 424


>AC084152-4|AAR85899.1|  753|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2b protein.
          Length = 753

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 518 SSHASQENATVSSHETRXGFSEKTLVQENSNGARI*HRPRH 640
           +SH++++  TVSS   R  F +   +Q  +   R  H  R+
Sbjct: 123 ASHSNEQPTTVSSSSARQSFQDSASMQNPAESTRSIHYSRY 163


>AC084152-3|AAK39314.2|  772|Caenorhabditis elegans Hypothetical
           protein Y102A11A.2a protein.
          Length = 772

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = +2

Query: 518 SSHASQENATVSSHETRXGFSEKTLVQENSNGARI*HRPRH 640
           +SH++++  TVSS   R  F +   +Q  +   R  H  R+
Sbjct: 123 ASHSNEQPTTVSSSSARQSFQDSASMQNPAESTRSIHYSRY 163


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,896,145
Number of Sequences: 27780
Number of extensions: 365389
Number of successful extensions: 950
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)