Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    25   0.71 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     25   0.71 
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    23   2.2  
DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    21   8.7  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   8.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   8.7  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    21   8.7  

>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 567 RVSCDDTVAFSCDAXELDGGSKRLPA-DTAGYHGTSLISSTAVIAEQPY 424
           R  C+   A S         +K  P     GY G +L+  + V  +QPY
Sbjct: 61  RYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPY 109


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 25.0 bits (52), Expect = 0.71
 Identities = 14/49 (28%), Positives = 20/49 (40%), Gaps = 1/49 (2%)
 Frame = -1

Query: 567 RVSCDDTVAFSCDAXELDGGSKRLPA-DTAGYHGTSLISSTAVIAEQPY 424
           R  C+   A S         +K  P     GY G +L+  + V  +QPY
Sbjct: 61  RYECEGRSAGSIPGVNSTSENKTFPTIKIVGYKGRALVVVSCVTKDQPY 109


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 23.4 bits (48), Expect = 2.2
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)
 Frame = -1

Query: 243 YSGERFNTHSIKVPKNVRFQFINRNSGPTSHREHD-TAGVWLRAISCSLRIAFQTG-TSA 70
           Y   +  TH    P  V+   + R+ GP S  + D +   + R      R++F     S 
Sbjct: 48  YENNQLPTHGKGTPTVVKTNILIRSMGPVSELDMDYSMDCYFRQSWRDSRLSFLGPIKSL 107

Query: 69  ALSVGLL----HP*TYF 31
           +LS+ +L     P TYF
Sbjct: 108 SLSIKMLERIWRPDTYF 124


>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 7/11 (63%), Positives = 9/11 (81%)
 Frame = +2

Query: 218 CVLKRSPLYTG 250
           C+LK  PL+TG
Sbjct: 39  CILKPKPLWTG 49


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 9/10 (90%), Positives = 9/10 (90%)
 Frame = -2

Query: 173 ETLAQHLTGN 144
           ETLAQ LTGN
Sbjct: 654 ETLAQFLTGN 663


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -3

Query: 292 VCLIKCTKSWRIVCA 248
           VC+ KC +  R VCA
Sbjct: 105 VCMRKCPRRHRPVCA 119


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 21.4 bits (43), Expect = 8.7
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -1

Query: 480 GYHGTSLISSTAVIAEQPYNRRID 409
           G+ GT    S  V+ ++PY + +D
Sbjct: 71  GFAGTPGYLSPEVLKKEPYGKPVD 94


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 206,279
Number of Sequences: 438
Number of extensions: 4357
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21926700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)