Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0409
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containi...    31   0.75 
At4g36280.1 68417.m05159 ATP-binding region, ATPase-like domain-...    29   4.0  
At1g54430.1 68414.m06209 hypothetical protein                          29   4.0  
At1g66920.1 68414.m07605 serine/threonine protein kinase, putati...    28   5.3  
At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar t...    28   7.0  
At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein con...    27   9.3  

>At1g01320.1 68414.m00048 tetratricopeptide repeat (TPR)-containing
            protein low similarity to SP|P46825 Kinesin light chain
            (KLC) {Loligo pealeii}; contains Pfam profile PF00515:
            TPR Domain
          Length = 1797

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +3

Query: 537  KTQQYHRTKHVXALARRPSYKRIVMAPGSSTGHAMIGGPK 656
            +++ YH    V +L + PSYK + +AP  S     +  P+
Sbjct: 1381 QSEAYHTKNSVVSLGKSPSYKEVALAPPGSIAKYQVWVPQ 1420


>At4g36280.1 68417.m05159 ATP-binding region, ATPase-like
           domain-containing protein low similarity to microrchidia
           [Mus musculus] GI:5410255; contains Pfam profile
           PF02518: ATPase, histidine kinase-, DNA gyrase B-, and
           HSP90-like domain protein
          Length = 626

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 585 RPSYKRIVMAPGSSTGHAMIGGPKRNXLAPAND 683
           RP +K  V   G STGH ++G  + N + PA+D
Sbjct: 407 RPFWK--VTMGGDSTGHGVVGVLEANFIEPAHD 437


>At1g54430.1 68414.m06209 hypothetical protein
          Length = 1639

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 400 YCKIYSAIIWLFGNHCRGTDKARAVITSG--IGGQSLGTSIE 519
           +C   SAI +LF    +G DKA  +I  G  + GQ  G   E
Sbjct: 837 WCNKSSAIKYLFKYITKGVDKATFIIQKGNSVNGQGSGNGFE 878


>At1g66920.1 68414.m07605 serine/threonine protein kinase, putative
           similar to receptor serine/threonine kinase PR55K
           gi|1235680|gb|AAC49208; contains protein kinase domain,
           Pfam:PF00069; contains serine/threonine protein kinase
           domain, INTERPRO:IPR002290
          Length = 609

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 19/76 (25%), Positives = 35/76 (46%), Gaps = 2/76 (2%)
 Frame = +2

Query: 386 IFGCYTVKSIRRLYGCSAITAVELIRLVP**PAVSAGSRLEPPSSSHASQENATVSS--H 559
           ++ CY V      YGC AI +V +   +    +  A   +  P+S   +++   ++S   
Sbjct: 131 LYRCYPVIPDLARYGCPAIGSVSVSDNLENPVSCEARFTVNIPTSFVPNEKRLNITSLVR 190

Query: 560 ETRXGFSEKTLVQENS 607
           + R GF  +  + ENS
Sbjct: 191 DVRNGFEVRLRIDENS 206


>At1g12050.1 68414.m01391 fumarylacetoacetase, putative similar to
           fumarylacetoacetase (Fumarylacetoacetate hydrolase,
           Beta-diketonase, FAA)[Rattus norvegicus]
           SWISS-PROT:P25093
          Length = 421

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = -3

Query: 628 VLDPGAITIL-LYEGLLAKAXTCFVR*YCCVFLRRVXTRWRFQATARRYRWLSRHEP 461
           VLD  AI+   L++GL+ K   CF++     FL      W+ +A +   R LS +EP
Sbjct: 44  VLDLSAISEAGLFDGLILKDADCFLQPNLNKFLAMGRPAWK-EARSTLQRILSSNEP 99


>At3g03640.1 68416.m00367 glycosyl hydrolase family 1 protein
           contains Pfam PF00232 : Glycosyl hydrolase family 1
           domain; TIGRFAM TIGR01233: 6-phospho-beta-galactosidase;
           identical to beta-glucosidase GB:AAC31962 [Arabidopsis
           thaliana]; similar to thioglucoside glucohydrolase
           (GI:984052) [Arabidopsis thaliana]
          Length = 531

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -3

Query: 481 WLSRHEPYQFHGSDCRTTI*SPNRFYSITTKNICTNRSGYEV 356
           W++ +EPY+F      T   +P R      +     +SG+EV
Sbjct: 198 WVTINEPYEFSRGGYETGEKAPGRCSKYVNEKCVAGKSGHEV 239


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,878,768
Number of Sequences: 28952
Number of extensions: 333069
Number of successful extensions: 818
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 818
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)