Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3F10.02c |trk1|sptrk|potassium ion transporter Trk1|Schizosa...    31   0.24 
SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.9  
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    26   5.2  
SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces pomb...    25   9.1  
SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   9.1  

>SPAC3F10.02c |trk1|sptrk|potassium ion transporter
           Trk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 841

 Score = 30.7 bits (66), Expect = 0.24
 Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 3/108 (2%)
 Frame = -3

Query: 543 CSYLFKW*KIFMYIAYILFV--AICLCSSRLGVTSEW*NKVWFSINV*NSCFNFIVLKLS 370
           CS +  +  IF   A++ F+  A     SR  + S    + W+++    S FN +   L 
Sbjct: 467 CSMVTLYFIIFNIAAFVTFIVFAYTAVGSREVIDSYDLRRGWWALFSSASSFNDLGFSLI 526

Query: 369 *INFIRRQSKLALFLNFSKGP-DGKSGKYCFSTSSEGTVYFLFPFSYK 229
             +F+     + L L  S     G +G  CF  +   T Y L+PFS++
Sbjct: 527 PSSFVPMNRNIFLLLISSLFIIAGNTGFPCFFRTFIWTTYKLYPFSFE 574


>SPAC9E9.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 313

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 16/56 (28%), Positives = 26/56 (46%)
 Frame = -1

Query: 731 SGNXPPXPPLWNSALNXGGXDSLCPLPVNSIAGPCXM*AKSSTANELSNMNNASDS 564
           S + P  PP  +  L   G +S  P+P+ S+     +  +  T + LSN +   DS
Sbjct: 119 SPSTPELPPSSSPLLPPNGSESSSPIPL-SLLSTSSLQQRKITPSNLSNTSKPMDS 173


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 13/54 (24%), Positives = 25/54 (46%)
 Frame = -2

Query: 376 IVINKFHSTPIKTGPFPEFFQRTGRQIREVLF*YIIRRHCVFSFSIFLQKFCLA 215
           I++ K  + P     FP   Q+    +++  F ++  RHC+  F +   K  L+
Sbjct: 256 ILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGRHCLLLFQVIAGKCALS 309


>SPBC1604.11 |atp17||F0 ATPase subunit F|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 96

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 11/38 (28%), Positives = 17/38 (44%)
 Frame = +2

Query: 287 YFPDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKH 400
           ++  LP GP  K    + F W   K++  N +   L H
Sbjct: 35  FYSRLPHGPAPKKSSNSFFSWYYKKYLGKNASGAPLLH 72


>SPBC106.12c |||THO complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 274

 Score = 25.4 bits (53), Expect = 9.1
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = +1

Query: 487 EKDVCNIHENFLPFEKIAAXPKCFQAESEALFMFDSSLAVE 609
           EKDV ++ ENF P   I    +  ++E      F++S   E
Sbjct: 98  EKDVLSLFENFHPIRVIMNYDRAGRSEGSCDVYFETSQDAE 138


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,206,047
Number of Sequences: 5004
Number of extensions: 68561
Number of successful extensions: 148
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 148
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 371330890
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)