Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)               41   0.001
SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8)                    29   5.5  

>SB_1019| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 151

 Score = 40.7 bits (91), Expect = 0.001
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
 Frame = +2

Query: 305 SGPLEKFRKRASFDWRRMKFIYDNFNTI-KLKHEFYTFMENHTLFHHSDVT-PSLDEQRH 478
           +GPL+ FRK+A+FD R M++  D    I + K  F+  M    LF H      S D +  
Sbjct: 16  NGPLDVFRKQATFDVREMRYFVDGGQDITEFKGNFWKRMGKVPLFSHEKTKGASFDGKGR 75

Query: 479 XATKRMYAIY 508
            A +R+  +Y
Sbjct: 76  LAFRRVRRVY 85


>SB_36481| Best HMM Match : DUF922 (HMM E-Value=1.8)
          Length = 1150

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 10/28 (35%), Positives = 20/28 (71%)
 Frame = +2

Query: 449  VTPSLDEQRHXATKRMYAIYMKIFYHLK 532
            ++P+L E+RH   +++ A  +K+F+ LK
Sbjct: 1047 LSPALREERHEEARKVAAFMIKVFWSLK 1074


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,411,914
Number of Sequences: 59808
Number of extensions: 489335
Number of successful extensions: 926
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 876
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2095976575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)