Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Y11411-1|CAA72214.1|  700|Homo sapiens pristanoyl-CoA oxidase pr...    45   3e-04
BC017053-1|AAH17053.1|  624|Homo sapiens ACOX3 protein protein.        45   3e-04

>Y11411-1|CAA72214.1|  700|Homo sapiens pristanoyl-CoA oxidase
           protein.
          Length = 700

 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 1/87 (1%)
 Frame = +2

Query: 293 PDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKHEFYTFMENHTLFHHS-DVTPSLDE 469
           P+ P GPL+ +R RASF W+ +    +    ++ K   ++ +EN  LF  S     SL++
Sbjct: 14  PEFPRGPLDAYRARASFSWKDVALFTEGEGNVRFKKTIFSALENDPLFARSPGADLSLEK 73

Query: 470 QRHXATKRMYAIYMKIFYHLKR*LQXP 550
            R     R   I+   F  ++   + P
Sbjct: 74  YRELNFLRCKRIFEYDFLSVEAMFKSP 100


>BC017053-1|AAH17053.1|  624|Homo sapiens ACOX3 protein protein.
          Length = 624

 Score = 44.8 bits (101), Expect = 3e-04
 Identities = 17/51 (33%), Positives = 28/51 (54%)
 Frame = +2

Query: 293 PDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKHEFYTFMENHTLFHHS 445
           P+ P GPL+ +R RASF W+ +    +    ++ K   ++ +EN  LF  S
Sbjct: 14  PEFPRGPLDAYRARASFSWKELALFTEGEGMLRFKKTIFSALENDPLFARS 64


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 111,649,750
Number of Sequences: 237096
Number of extensions: 2427511
Number of successful extensions: 4455
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 4314
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4455
length of database: 76,859,062
effective HSP length: 89
effective length of database: 55,757,518
effective search space used: 9311505506
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)