Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical pr...    45   5e-05
U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical pr...    29   4.8  
U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four) int...    29   4.8  
U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine rec...    28   8.5  
U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set (trithorax/...    28   8.5  
U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set (trithorax/...    28   8.5  
AF000262-6|AAN60524.1|  318|Caenorhabditis elegans Lipid deplete...    28   8.5  

>U58756-9|AAC48086.1|  667|Caenorhabditis elegans Hypothetical
           protein F58F9.7 protein.
          Length = 667

 Score = 45.2 bits (102), Expect = 5e-05
 Identities = 22/64 (34%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
 Frame = +2

Query: 305 SGPL-EKFRKRASFDWRRMKFIYDNFNTIKLKHEFYTFMENHTLFHHSDVTPSLDEQRHX 481
           S PL +K+RK A+FDW+++K   +    ++LK E    M++  +FH      S +EQR  
Sbjct: 2   SAPLIDKYRKMATFDWKKLKAAVEGEEHVRLKSEVVAKMKSEPVFHRDYRVLSREEQREV 61

Query: 482 ATKR 493
             +R
Sbjct: 62  VHQR 65


>U70856-4|AAB09167.1| 2090|Caenorhabditis elegans Hypothetical protein
            F57F4.4 protein.
          Length = 2090

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 680  PC*GHCSKAGXLVAGFRSSTEKCPXXXFC 766
            PC G CS    +V GF+ +T  C     C
Sbjct: 1322 PCNGQCSSLSGVVGGFQVNTYHCMPNSIC 1350


>U70856-3|AAB09166.1| 2153|Caenorhabditis elegans Gei-4(four)
            interacting proteinprotein 1 protein.
          Length = 2153

 Score = 28.7 bits (61), Expect = 4.8
 Identities = 11/29 (37%), Positives = 14/29 (48%)
 Frame = +2

Query: 680  PC*GHCSKAGXLVAGFRSSTEKCPXXXFC 766
            PC G CS    +V GF+ +T  C     C
Sbjct: 1322 PCNGQCSSLSGVVGGFQVNTYHCMPNSIC 1350


>U39472-10|AAZ82853.1|  354|Caenorhabditis elegans Serpentine
           receptor, class a (alpha)protein 36 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = -3

Query: 573 FRFCLKAFGXCSYLFKW*KIFMYIAYILFVAICLCSSRLGVTSE 442
           +R   K+   C  +FK  + F Y    +FV + L +S+  VT E
Sbjct: 92  YRSIEKSNNSCGIMFKGSECFSYYVIGIFVRVLLLTSQFAVTIE 135


>U13875-4|AAK67215.1| 1510|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           c protein.
          Length = 1510

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 350 RRMKFIYDNFNTIKLKHEFYTFMENHTLFHHSDVTPSLD 466
           R MK  Y  F T+K  H FY+      L   +  TP +D
Sbjct: 165 RHMKMAYVKFATVKEAHNFYSMYHAQNLL-ATKCTPRID 202


>U13875-3|AAK67214.1| 1507|Caenorhabditis elegans Set
           (trithorax/polycomb) domaincontaining protein 2, isoform
           a protein.
          Length = 1507

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 350 RRMKFIYDNFNTIKLKHEFYTFMENHTLFHHSDVTPSLD 466
           R MK  Y  F T+K  H FY+      L   +  TP +D
Sbjct: 165 RHMKMAYVKFATVKEAHNFYSMYHAQNLL-ATKCTPRID 202


>AF000262-6|AAN60524.1|  318|Caenorhabditis elegans Lipid depleted
           protein 2 protein.
          Length = 318

 Score = 27.9 bits (59), Expect = 8.5
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +2

Query: 278 LKQYFPDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKHE 403
           LK  + D P    E   K+  +D  R ++  DNF  I+L  +
Sbjct: 197 LKNQYSDAPEEIREMSEKKYQYDRERERYEEDNFTRIRLNKD 238


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,910,132
Number of Sequences: 27780
Number of extensions: 397075
Number of successful extensions: 773
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 758
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 773
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1851132448
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)