Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   9.6  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 12/44 (27%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
 Frame = +2

Query: 551 NAFKQ-NRKHCSCLTVH*LWNFSLTXRMARQCY*LVAGRDYPYP 679
           +A+K  N+++ +      LWNF +    +RQ    +  R+  YP
Sbjct: 81  DAYKDLNQRYGALCKEEALWNFPMISVFSRQDIETIIRRNSRYP 124


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 293  GSTVLVHHQKALCIFFFHFPTKILLSAKRAPINFVL*LT 177
            G  + +HH+   C+     P  ++L A  A    ++ LT
Sbjct: 1094 GLRLCLHHRDLPCVLRASTPAPVVLEAVHASRRVLIVLT 1132


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.6
 Identities = 6/16 (37%), Positives = 11/16 (68%)
 Frame = +2

Query: 326 RKRASFDWRRMKFIYD 373
           R+R  FDW+++  + D
Sbjct: 414 RERMEFDWKQVALVSD 429


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,453
Number of Sequences: 438
Number of extensions: 5056
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24154023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)