Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0408
         (770 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g23430.1 68415.m02797 kip-related protein 1 (KRP1) / cyclin-d...    31   0.84 
At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein ...    28   5.9  
At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly id...    28   5.9  
At2g31160.1 68415.m03804 expressed protein contains Pfam profile...    28   5.9  
At4g39900.1 68417.m05652 expressed protein                             28   7.9  
At3g19470.1 68416.m02468 F-box family protein contains F-box dom...    28   7.9  
At2g02660.1 68415.m00205 hypothetical protein                          28   7.9  
At1g13200.1 68414.m01531 F-box family protein contains F-box dom...    28   7.9  

>At2g23430.1 68415.m02797 kip-related protein 1 (KRP1) /
           cyclin-dependent kinase inhibitor 1 (ICK1) identical to
           cyclin-dependent kinase inhibitor (ICK1) [Arabidopsis
           thaliana] GI:3550262, GI:2052502
          Length = 191

 Score = 31.1 bits (67), Expect = 0.84
 Identities = 13/54 (24%), Positives = 29/54 (53%)
 Frame = +2

Query: 236 ENGKRKYTVPSDDVLKQYFPDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLK 397
           E  K    +P++  ++ +F +      EKF+K+ +FD+ + K +   +  +KL+
Sbjct: 138 EKAKLMTEMPTESEIEDFFVEAEKQLKEKFKKKYNFDFEKEKPLEGRYEWVKLE 191


>At5g44260.1 68418.m05416 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 381

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = -1

Query: 665 LCPLPVNSIAGPCXM*AKSSTANELSNMNN 576
           L P P N I+G C     SS A+ LSN NN
Sbjct: 165 LPPSPENHISGGCGGSPSSSPASVLSNKNN 194


>At3g02260.1 68416.m00207 auxin transport protein (BIG) nearly
            identical to auxin transport protein; BIG [Arabidopsis
            thaliana] GI:21779966; contains Pfam profiles PF02207:
            Putative zinc finger in N-recognin, PF00569: Zinc finger
            ZZ type
          Length = 5098

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = +2

Query: 275  VLKQYFPDLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKHEF 406
            VL  Y+ + P   L + +   S  W+R K  + +FN  +LK EF
Sbjct: 3392 VLNLYYNNRPVSDLSELKNNWSL-WKRAKSCHLSFNQTELKVEF 3434


>At2g31160.1 68415.m03804 expressed protein contains Pfam profile
           PF04852: Protein of unknown function (DUF640)
          Length = 219

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +1

Query: 364 YL*QFQHNKIET*ILHIYGEPYLVSPL*C 450
           YL QF   K+ T I H YG P   +P  C
Sbjct: 93  YLDQFGKTKVHTNICHFYGHPNPPAPCPC 121


>At4g39900.1 68417.m05652 expressed protein
          Length = 245

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 10/48 (20%), Positives = 28/48 (58%)
 Frame = +2

Query: 245 KRKYTVPSDDVLKQYFPDLPSGPLEKFRKRASFDWRRMKFIYDNFNTI 388
           +R+ ++ +D  L +   D P+    ++++ ASFD R++  ++   +++
Sbjct: 172 QRQASLSTDKALSERCHDAPTNRWRRYKRAASFDSRKIVILFSILSSV 219


>At3g19470.1 68416.m02468 F-box family protein contains F-box domain
           Pfam:PF00646
          Length = 382

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 16/59 (27%), Positives = 28/59 (47%)
 Frame = -1

Query: 665 LCPLPVNSIAGPCXM*AKSSTANELSNMNNASDSA*KHLGXAAIFSNGKKFSCILHTSF 489
           LC +P+ S+          ST  + S ++     A KHL  A + ++ K+F  +L  +F
Sbjct: 13  LCRIPLTSLR------PVRSTCKKWSTLSKCGSFAKKHLAQAKVLADAKEFMVVLMMNF 65


>At2g02660.1 68415.m00205 hypothetical protein
          Length = 421

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 403 ILHIYGEPYLVSPL*CHPKPG 465
           +++IYG+ Y+  PL C+P  G
Sbjct: 111 LIYIYGDRYVARPLICNPNTG 131


>At1g13200.1 68414.m01531 F-box family protein contains F-box domain
           Pfam:PF00646; contains TIGRFAM TIGR01640: F-box protein
           interaction domain
          Length = 435

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 22/93 (23%), Positives = 37/93 (39%), Gaps = 4/93 (4%)
 Frame = +2

Query: 263 PSDDVLKQYFP-DLPSGPLEKFRKRASFDWRRMKFIYDNFNTIKLKHEFYTFMENHT--L 433
           PS+D  ++ F  DL S P  +  KR  FDW +   +         K++       ++  L
Sbjct: 343 PSEDTWEKIFSIDLVSCPSSRTEKRDQFDWSKKDRVEPATPVAVCKNKKILLSHRYSRGL 402

Query: 434 FHHSDVTPSLD-EQRHXATKRMYAIYMKIFYHL 529
             +  +T S+D    H    R    +  +  HL
Sbjct: 403 VKYDPLTKSIDFFSGHPTAYRKVIYFQSLISHL 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,466,891
Number of Sequences: 28952
Number of extensions: 343454
Number of successful extensions: 648
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 639
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 648
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1716774400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)