Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0407
(547 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha... 32 0.048
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 30 0.19
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 30 0.26
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 29 0.34
SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit |Sch... 27 1.4
SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 27 2.4
SPBC1711.14 |rec15||meiotic recombination protein Rec15|Schizosa... 27 2.4
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei... 26 3.2
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac... 26 3.2
SPAC20G8.10c ||SPAC3A12.01c|beclin family protein|Schizosaccharo... 26 4.2
SPAPB1A11.01 ||SPAPB24D3.11|membrane transporter|Schizosaccharom... 26 4.2
SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces pom... 26 4.2
SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual 25 5.5
SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 25 7.3
SPCC1672.02c |sap1||switch-activating protein Sap1|Schizosacchar... 25 9.6
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|... 25 9.6
SPAC1556.03 |azr1||serine/threonine protein phosphatase Azr1|Sch... 25 9.6
>SPBC146.03c |cut3|smc4, smc4|condensin subunit
Cut3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1324
Score = 32.3 bits (70), Expect = 0.048
Identities = 23/67 (34%), Positives = 39/67 (58%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVE 222
QQ+ ++D I+K +Q NA+++ +Q+A L EK+N+ E K++ QVE
Sbjct: 492 QQEELSLDDIRKSLQGKTEGISNAIEE----KQKAMAPAL--EKINQLTSE--KQILQVE 543
Query: 223 EDLILNK 243
D++LNK
Sbjct: 544 LDMLLNK 550
Score = 27.1 bits (57), Expect = 1.8
Identities = 17/79 (21%), Positives = 35/79 (44%), Gaps = 4/79 (5%)
Frame = +1
Query: 1 GPSRGGVFNSTGP*QQKAATMDA----IKKKMQAMKLEKDNAMDKADTCEQQARXANLRA 168
G +R V +G K+ TM +KK + + D + +TC++Q + + R
Sbjct: 766 GKTRWRVVTLSGQLIDKSGTMTGGGTRVKKGGMSSAITSDVSPASVETCDKQVQLEDTRY 825
Query: 169 EKVNEEVRELQKKLAQVEE 225
+ E+ L ++ ++ E
Sbjct: 826 RQHLSELESLNQRFTEISE 844
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 30.3 bits (65), Expect = 0.19
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +1
Query: 70 IKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRE---LQKKLAQVEEDLILN 240
++K+++ KLE+ + K D L+ K+N +V E L+K + + ED L
Sbjct: 833 LRKQIERTKLEETSFKKKIDDAVLANNEQKLKLTKLNFQVNELEQLEKDINKSSEDCDLQ 892
Query: 241 KNKL 252
K KL
Sbjct: 893 KKKL 896
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 29.9 bits (64), Expect = 0.26
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = +3
Query: 270 LEEKEKQLTATEAEVAALNRKVQQIDEDLEKS 365
LEE K L + +V +L + +Q + EDL KS
Sbjct: 670 LEESNKSLIKKQEDVDSLEKNIQTLKEDLRKS 701
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.5 bits (63), Expect = 0.34
Identities = 14/55 (25%), Positives = 27/55 (49%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKK 207
Q+ + + ++ LEKD K + QQ +NLR + + E+ E++K+
Sbjct: 225 QEASLEKSQLSSQLSDAVLEKDALQRKVSSLSQQFTESNLRYQNIVAELSEMRKQ 279
Score = 29.1 bits (62), Expect = 0.45
Identities = 13/52 (25%), Positives = 26/52 (50%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQ 216
++ +KK +A++ EK K ++ + +NEEV L+K++ Q
Sbjct: 1354 LEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVENLKKEVEQ 1405
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 5/50 (10%)
Frame = +3
Query: 225 RPDPEQEQT*QANKDLEEKEKQ-----LTATEAEVAALNRKVQQIDEDLE 359
R DP Q + + N + EKEKQ L T E ++V ++E++E
Sbjct: 1348 RVDPTQLEELKKNCEALEKEKQELETKLQETAKETDTFKQQVNSLNEEVE 1397
>SPCC584.01c |||sulfite reductase NADPH flavoprotein subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 27.5 bits (58), Expect = 1.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = +3
Query: 258 ANKDLEEKEKQLTATEAEVAALNRKVQQIDEDL 356
A KD E EK+L +T E + V+ +DED+
Sbjct: 558 ALKDREPSEKELPSTAKETSFAPNAVKTLDEDI 590
>SPBC16E9.16c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 642
Score = 26.6 bits (56), Expect = 2.4
Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +1
Query: 73 KKKMQAMKLEKDNAMDKADTCEQQA----RXANLRAEKVNEEVRE--LQKKLAQVEEDLI 234
KK Q +L + A + + E+ A + A AE+ +RE L+ +LAQ D+
Sbjct: 148 KKAAQDAELASERAREAQSSIERSASLREKQAREEAERAATALREAELKHRLAQANADVD 207
Query: 235 LNKNKLD 255
+ +KLD
Sbjct: 208 VANSKLD 214
>SPBC1711.14 |rec15||meiotic recombination protein
Rec15|Schizosaccharomyces pombe|chr 2|||Manual
Length = 180
Score = 26.6 bits (56), Expect = 2.4
Identities = 16/66 (24%), Positives = 28/66 (42%)
Frame = +1
Query: 58 TMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLIL 237
+++ I MQ + L + + + EQ NL+ E + +E K LA + +
Sbjct: 72 SLNQINMSMQQVALGIQDYASRINKLEQTMSDMNLKFEALQKEQNSNTKTLADCTSQMTI 131
Query: 238 NKNKLD 255
KLD
Sbjct: 132 ITKKLD 137
>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1462
Score = 26.2 bits (55), Expect = 3.2
Identities = 14/57 (24%), Positives = 26/57 (45%)
Frame = +1
Query: 85 QAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNKNKLD 255
Q LEK+N + + E +L +++ + ++ LAQ E L+ N L+
Sbjct: 900 QGTSLEKENEEEGKNPVESNCSEESLDDHNIDQTLVNKKETLAQDSESLLQKNNALN 956
>SPCC736.14 |dis1||microtubule-associated protein Dis1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 882
Score = 26.2 bits (55), Expect = 3.2
Identities = 12/41 (29%), Positives = 24/41 (58%)
Frame = +3
Query: 240 QEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
+EQ + + +KE ++T+ E L+ ++QQ+ +LEK
Sbjct: 733 KEQVYEKESTISQKEVEITSLRNEKDRLSTRLQQVLLELEK 773
>SPAC20G8.10c ||SPAC3A12.01c|beclin family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 464
Score = 25.8 bits (54), Expect = 4.2
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +3
Query: 264 KDLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
K + EKE+++ E L + ++++DE+ EK
Sbjct: 197 KQINEKEEKIEEISDETDKLQKLLRELDEEKEK 229
>SPAPB1A11.01 ||SPAPB24D3.11|membrane
transporter|Schizosaccharomyces pombe|chr 1|||Manual
Length = 495
Score = 25.8 bits (54), Expect = 4.2
Identities = 13/33 (39%), Positives = 20/33 (60%)
Frame = +3
Query: 255 QANKDLEEKEKQLTATEAEVAALNRKVQQIDED 353
QA K LE++E Q + E +++ + QQID D
Sbjct: 228 QAKKLLEKQENQ-KSVEVKISEITESSQQIDPD 259
>SPAC57A7.12 |||heat shock protein Pdr13 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 566
Score = 25.8 bits (54), Expect = 4.2
Identities = 14/36 (38%), Positives = 21/36 (58%)
Frame = +3
Query: 249 T*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDL 356
T Q +++ + KEK LTA EA V L R + ++ L
Sbjct: 124 TVQEDEESDPKEKILTAHEASVRHLRRLTESAEDFL 159
>SPBC16E9.12c |pab2||poly|Schizosaccharomyces pombe|chr 2|||Manual
Length = 166
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = +3
Query: 237 EQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLE 359
+Q+ K+L E ++++ EAE A L +Q+D + E
Sbjct: 3 DQDALDTQEKELLEMKERVAEMEAEAAKLRAMQEQLDNETE 43
>SPBC365.04c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 233
Score = 25.0 bits (52), Expect = 7.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 264 KDLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
K LE + K+ + +KVQQ +E+LEK
Sbjct: 11 KSLEYRSKKFDKKSQSLEEHEKKVQQKNEELEK 43
>SPCC1672.02c |sap1||switch-activating protein
Sap1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 254
Score = 24.6 bits (51), Expect = 9.6
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +3
Query: 267 DLEEKEKQLTATEAEVAALNRKVQQI 344
D EEK Q+ A EV A N+++QQ+
Sbjct: 176 DNEEKLMQVNAKMDEVLAENKRLQQL 201
>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 341
Score = 24.6 bits (51), Expect = 9.6
Identities = 16/48 (33%), Positives = 27/48 (56%)
Frame = +1
Query: 112 AMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNKNKLD 255
A +KA ++ R A A+ E+ +E QK Q E+D + +KN++D
Sbjct: 251 AREKAREARRR-RSAQNSAKLEKEKAKEKQKDKDQ-EQDTVSDKNQID 296
>SPAC1556.03 |azr1||serine/threonine protein phosphatase
Azr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 288
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/14 (71%), Positives = 12/14 (85%)
Frame = -2
Query: 54 GFLLLRSGRIKYAS 13
GFL+LR+G I YAS
Sbjct: 151 GFLILRNGAIHYAS 164
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,120
Number of Sequences: 5004
Number of extensions: 25002
Number of successful extensions: 134
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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