Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0407
         (547 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly pro...    25   0.38 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             25   0.38 
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   1.5  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   8.2  

>AF004842-1|AAD01205.1|  598|Apis mellifera major royal jelly
           protein MRJP5 protein.
          Length = 598

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 17/63 (26%), Positives = 30/63 (47%), Gaps = 1/63 (1%)
 Frame = +1

Query: 58  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQ-VEEDLI 234
           TMD   K  +  +++K + MD+ D   +  R  N    ++NE +  L  KL + +  D  
Sbjct: 503 TMDRTDKMSRIDRMDKIDRMDRMDRTNRMDR-MNRMNRQMNEYMMALSMKLQKFINNDYN 561

Query: 235 LNK 243
            N+
Sbjct: 562 FNE 564



 Score = 22.6 bits (46), Expect = 2.7
 Identities = 9/42 (21%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
 Frame = +1

Query: 58  TMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANL-RAEKVN 180
           TMD + +  +  ++++ + MD+ DT ++  + + + R +K++
Sbjct: 479 TMDTMDRMDRMDRMDRMDRMDRMDTMDRTDKMSRIDRMDKID 520


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 25.4 bits (53), Expect = 0.38
 Identities = 11/43 (25%), Positives = 22/43 (51%)
 Frame = +3

Query: 201  EEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNR 329
            +  +P   +P P+Q+Q  Q  +  ++++K+  A    V  L R
Sbjct: 1520 QSQQPQQQQPQPQQQQQQQQQQQPQQQQKEYGAVSGLVVQLQR 1562


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 9/34 (26%), Positives = 17/34 (50%)
 Frame = +3

Query: 432 RMCKVLENRAQXDXERMDQLTNQLXEPVSSPMTL 533
           R+C  + +R + +  R+D   N+   P  S  T+
Sbjct: 105 RVCVAISSRMEYECSRIDYFPNEEYSPDPSDSTM 138


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 8.2
 Identities = 9/20 (45%), Positives = 10/20 (50%)
 Frame = -3

Query: 518 GDGLXQLVGELVHTLXVXLC 459
           G GL    GEL+H L    C
Sbjct: 397 GAGLLSAYGELLHALTSGKC 416


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,572
Number of Sequences: 438
Number of extensions: 2043
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15581757
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)