Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0407
(547 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911... 35 0.041
At4g31340.1 68417.m04445 myosin heavy chain-related contains wea... 33 0.16
At4g25070.1 68417.m03596 expressed protein ; expression supporte... 33 0.16
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 32 0.29
At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zi... 32 0.29
At5g51120.1 68418.m06339 polyadenylate-binding protein, putative... 31 0.38
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 31 0.38
At1g12150.1 68414.m01407 expressed protein contains Pfam profile... 31 0.38
At1g03830.1 68414.m00364 guanylate-binding family protein contai... 31 0.38
At3g54670.1 68416.m06049 structural maintenance of chromosomes (... 31 0.66
At1g27040.2 68414.m03296 nitrate transporter, putative contains ... 31 0.66
At1g27040.1 68414.m03297 nitrate transporter, putative contains ... 31 0.66
At5g42870.1 68418.m05225 lipin family protein contains Pfam prof... 30 0.88
At4g03100.1 68417.m00418 rac GTPase activating protein, putative... 29 1.5
At5g65770.1 68418.m08276 nuclear matrix constituent protein-rela... 29 2.0
At4g36860.2 68417.m05227 LIM domain-containing protein low simil... 29 2.0
At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2 tr... 29 2.0
At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2 tr... 29 2.0
At5g48600.1 68418.m06011 structural maintenance of chromosomes (... 29 2.7
At5g43530.1 68418.m05322 SNF2 domain-containing protein / helica... 29 2.7
At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family pr... 29 2.7
At2g01750.1 68415.m00104 expressed protein 28 3.5
At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to... 28 3.5
At4g28800.1 68417.m04118 bHLH family protein contains Pfam profi... 28 4.7
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 4.7
At4g11080.1 68417.m01800 high mobility group (HMG1/2) family pro... 28 4.7
At2g21230.1 68415.m02520 bZIP family transcription factor contai... 28 4.7
At4g31570.1 68417.m04483 expressed protein 27 6.2
At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative s... 27 6.2
At4g17220.1 68417.m02590 expressed protein 27 6.2
At3g12380.1 68416.m01543 actin/actin-like family protein similar... 27 6.2
At3g09000.1 68416.m01053 proline-rich family protein 27 6.2
At1g63640.2 68414.m07198 kinesin motor protein-related C-termina... 27 6.2
At1g63640.1 68414.m07197 kinesin motor protein-related C-termina... 27 6.2
At1g22260.1 68414.m02782 expressed protein 27 6.2
At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zi... 27 6.2
At4g36120.1 68417.m05141 expressed protein 27 8.2
At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyo... 27 8.2
At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF038... 27 8.2
At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein... 27 8.2
At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY) domain-c... 27 8.2
At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY) domain-c... 27 8.2
At1g21810.1 68414.m02729 expressed protein 27 8.2
At1g13220.2 68414.m01534 nuclear matrix constituent protein-rela... 27 8.2
At1g13220.1 68414.m01533 nuclear matrix constituent protein-rela... 27 8.2
>At1g19835.1 68414.m02487 expressed protein contains Pfam PF05911:
Plant protein of unknown function (DUF869)
Length = 982
Score = 34.7 bits (76), Expect = 0.041
Identities = 23/69 (33%), Positives = 37/69 (53%)
Frame = +1
Query: 25 NSTGP*QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQK 204
N T + K AT ++ + +KLEK+ A +CE A+L A K +++E +K
Sbjct: 712 NGTSGYEPKLATCKFTTEEFEGLKLEKEKAESNLASCE-----ADLEATKT--KLQETEK 764
Query: 205 KLAQVEEDL 231
LA+V+ DL
Sbjct: 765 LLAEVKSDL 773
>At4g31340.1 68417.m04445 myosin heavy chain-related contains weak
similarity to Myosin heavy chain, nonmuscle type A
(Cellular myosin heavy chain, type A) (Nonmuscle myosin
heavy chain-A) (NMMHC-A) (Swiss-Prot:P35579) [Homo
sapiens]
Length = 437
Score = 32.7 bits (71), Expect = 0.16
Identities = 16/62 (25%), Positives = 32/62 (51%)
Frame = +3
Query: 177 KRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDL 356
K+GS + ++ R D ++Q LE+K K+ +TEA +K+++++ L
Sbjct: 97 KKGSSDSAKQLGKAQARADELEKQVEVLKNFLEQKNKEKDSTEARTNEAEKKLRELNSSL 156
Query: 357 EK 362
+K
Sbjct: 157 DK 158
>At4g25070.1 68417.m03596 expressed protein ; expression supported
by MPSS
Length = 765
Score = 32.7 bits (71), Expect = 0.16
Identities = 14/52 (26%), Positives = 28/52 (53%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVREL 198
Q+ A++ ++ ++ E DN MDK E++ A RA+++ ++V L
Sbjct: 397 QEDDREASALRDELDMLQEENDNIMDKLQRAEERREAAEARAKELEKQVASL 448
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 31.9 bits (69), Expect = 0.29
Identities = 11/54 (20%), Positives = 32/54 (59%)
Frame = +1
Query: 64 DAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEE 225
+++KK+++ + EKD + + E+Q N E + +++R+ +K++ +++
Sbjct: 223 ESLKKEIERLSKEKDGLLKSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQ 276
>At1g80790.1 68414.m09479 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 31.9 bits (69), Expect = 0.29
Identities = 17/61 (27%), Positives = 30/61 (49%)
Frame = +1
Query: 64 DAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNK 243
+ IKKKM+ MK E + + E ++ K N+E+ E +K L +L+ ++
Sbjct: 436 EGIKKKMKKMKEELEEKCSELQDLEDTNSALMVKERKSNDEIVEARKFLITELRELVSDR 495
Query: 244 N 246
N
Sbjct: 496 N 496
>At5g51120.1 68418.m06339 polyadenylate-binding protein, putative /
PABP, putative contains similarity to poly(A)-binding
protein II [Mus musculus] GI:2351846; contains InterPro
entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 227
Score = 31.5 bits (68), Expect = 0.38
Identities = 17/70 (24%), Positives = 32/70 (45%)
Frame = +3
Query: 171 EGKRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDE 350
EG+ + E G E+ + +++DLE+ +K++ E E AL + ++
Sbjct: 21 EGEMDTEEYEEHGGEEGAAAGDEELEPGSSSRDLEDMKKRIKEIEEEAGALREMQAKAEK 80
Query: 351 DLEKSXXXSG 380
D+ S SG
Sbjct: 81 DMGASQDPSG 90
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/54 (33%), Positives = 29/54 (53%)
Frame = +3
Query: 201 EEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
EEA+ G+ Q+ K+ EEKEK++ + V L +V++ EDL+K
Sbjct: 1490 EEAKEEAGKRTTTDAVVEQSVKEREEKEKRIQILDKYVHQLKDEVRKKTEDLKK 1543
Score = 27.1 bits (57), Expect = 8.2
Identities = 22/85 (25%), Positives = 35/85 (41%), Gaps = 4/85 (4%)
Frame = +3
Query: 237 EQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLEKSXXXSGTXXXXXXXXXXX 416
E+E T KDL E+EK+L + A + + + ++LEK+ T
Sbjct: 1416 EKELT-NCKKDLSEREKRLDDAQQAQATMQSEFNKQKQELEKNKKIHYTLNMTKRKYEKE 1474
Query: 417 XDE----NNRMCKVLENRAQXDXER 479
DE N + K LE + +R
Sbjct: 1475 KDELSKQNQSLAKQLEEAKEEAGKR 1499
>At1g12150.1 68414.m01407 expressed protein contains Pfam profile
PF05701: Plant protein of unknown function (DUF827);
expression supported by MPSS
Length = 548
Score = 31.5 bits (68), Expect = 0.38
Identities = 19/56 (33%), Positives = 34/56 (60%), Gaps = 1/56 (1%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNE-EVRELQKKLAQVEE 225
+DA K+++ ++ D+AMD T QA A RA +VN +V EL K+++ +++
Sbjct: 161 LDAAKQQLNKIRQSFDSAMDFKATALNQAAEAQ-RALQVNSAKVNELSKEISDMKD 215
Score = 28.3 bits (60), Expect = 3.5
Identities = 12/56 (21%), Positives = 30/56 (53%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEED 228
++++KK+ +A + + A + + ++ A EKV EE++ + +K ++D
Sbjct: 392 IESLKKETEAAMIAAEEAEKRLELVIREVEEAKSAEEKVREEMKMISQKQESKKQD 447
>At1g03830.1 68414.m00364 guanylate-binding family protein contains
Pfam domains PF02263: Guanylate-binding protein,
N-terminal domain and PF02841: Guanylate-binding
protein, C-terminal domain
Length = 991
Score = 31.5 bits (68), Expect = 0.38
Identities = 18/73 (24%), Positives = 37/73 (50%), Gaps = 3/73 (4%)
Frame = +1
Query: 46 QKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEE---VRELQKKLAQ 216
+KAA + +++++ + + E + K D C +A+ L+ +NE+ V+ + L
Sbjct: 574 EKAAKLATLEQQLASTRAELKKSALKVDECSSEAKDVRLQMSLLNEKYESVKSASELLET 633
Query: 217 VEEDLILNKNKLD 255
E L K++LD
Sbjct: 634 ETETLKREKDELD 646
>At3g54670.1 68416.m06049 structural maintenance of chromosomes
(SMC) family protein similar to SMC1 protein [Bos
taurus] GI:4235253, 14S cohesin SMC1 subunit (SMC
protein) [Xenopus laevis] GI:3328231; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1257
Score = 30.7 bits (66), Expect = 0.66
Identities = 18/56 (32%), Positives = 32/56 (57%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEED 228
+ ++KK+Q ++EK + DK EQ+ R N+ E+++ EL K +A+ E D
Sbjct: 730 ISGLEKKIQYAEIEKKSIKDKLPQLEQEER--NI-IEEIDRIKPELSKAIARTEVD 782
>At1g27040.2 68414.m03296 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 563
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -2
Query: 282 PSLQGPCWPVKFVLVQDQVFLHLGELLLEFADFLVYLLSTEVGVSSLLFAGVGLVHGIV 106
PS P +PV F+L+ + HL ++ FA + +E+G++ L GVGLV IV
Sbjct: 364 PSASLPVFPVVFMLILAPTYDHL---IIPFARKVT---KSEIGITHLQRIGVGLVLSIV 416
>At1g27040.1 68414.m03297 nitrate transporter, putative contains
Pfam profile: PF00854 POT family; similar to nitrate
transporter (NTL1) GI:3377517 [Arabidopsis thaliana]
Length = 567
Score = 30.7 bits (66), Expect = 0.66
Identities = 21/59 (35%), Positives = 32/59 (54%)
Frame = -2
Query: 282 PSLQGPCWPVKFVLVQDQVFLHLGELLLEFADFLVYLLSTEVGVSSLLFAGVGLVHGIV 106
PS P +PV F+L+ + HL ++ FA + +E+G++ L GVGLV IV
Sbjct: 368 PSASLPVFPVVFMLILAPTYDHL---IIPFARKVT---KSEIGITHLQRIGVGLVLSIV 420
>At5g42870.1 68418.m05225 lipin family protein contains Pfam
profile: PF04571 lipin, N-terminal conserved region
Length = 930
Score = 30.3 bits (65), Expect = 0.88
Identities = 13/43 (30%), Positives = 26/43 (60%)
Frame = +3
Query: 204 EARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRK 332
EA P G +PE++Q + + +++ + LT T ++A+L+ K
Sbjct: 655 EASPSGDTAEPEEKQEKSSPRPMKKTVRALTPTSEQLASLDLK 697
>At4g03100.1 68417.m00418 rac GTPase activating protein, putative
similar to rac GTPase activating protein 3 [Lotus
japonicus] GI:3695063; contains Pfam profile PF00620:
RhoGAP domain
Length = 430
Score = 29.5 bits (63), Expect = 1.5
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 100 EKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQ 216
+ DNA D +CE QA + E+ EEV + Q+ L++
Sbjct: 328 DSDNAQDMEVSCESQATDSECGEEEEVEEVEQHQEHLSR 366
>At5g65770.1 68418.m08276 nuclear matrix constituent protein-related
low similarity to nuclear matrix constituent protein 1
(NMCP1) [Daucus carota] GI:2190187
Length = 1042
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/32 (40%), Positives = 22/32 (68%)
Frame = +3
Query: 267 DLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
+L+EKEK L ATE ++ NRK ++++ E+
Sbjct: 456 NLDEKEKNLVATEEDI---NRKTTMLEDEKER 484
>At4g36860.2 68417.m05227 LIM domain-containing protein low
similarity to LIM-domain protein [Branchiostoma
floridae] GI:3360516, DRAL/Slim3/FHL2 [Homo sapiens]
GI:7209525; contains Pfam profile PF00412: LIM domain
Length = 547
Score = 29.1 bits (62), Expect = 2.0
Identities = 18/61 (29%), Positives = 25/61 (40%)
Frame = +3
Query: 171 EGKRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDE 350
E R EE + E+E+ +A LEE EK L E + R Q++E
Sbjct: 91 EYMRAQLEAAEEEERRVAQAQIEEEEKRRAEAQLEETEKLLAKARLEEEEMRRSKAQLEE 150
Query: 351 D 353
D
Sbjct: 151 D 151
>At2g24420.2 68415.m02918 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 177 KRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDL 356
K+GS + E R ++Q K LE+K K+ EA+ + +K+ +++ +
Sbjct: 100 KKGSSDSVELLSKAQARATELEKQVEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRV 159
Query: 357 EK 362
EK
Sbjct: 160 EK 161
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILN 240
++ +KK ++ EK+ + E++ N R EK+++ E + K+ ++E L ++
Sbjct: 124 VEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRVEKLHKTNEEQKNKIRKLERALKIS 183
Query: 241 KNKL 252
+ ++
Sbjct: 184 EEEM 187
>At2g24420.1 68415.m02917 DNA repair ATPase-related contains 2
transmembrane domains; similar to DNA double-strand
break repair rad50 ATPase. (Swiss-Prot:O33600)
[Sulfolobus acidocaldarius]
Length = 440
Score = 29.1 bits (62), Expect = 2.0
Identities = 16/62 (25%), Positives = 30/62 (48%)
Frame = +3
Query: 177 KRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDL 356
K+GS + E R ++Q K LE+K K+ EA+ + +K+ +++ +
Sbjct: 100 KKGSSDSVELLSKAQARATELEKQVEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRV 159
Query: 357 EK 362
EK
Sbjct: 160 EK 161
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/64 (20%), Positives = 34/64 (53%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILN 240
++ +KK ++ EK+ + E++ N R EK+++ E + K+ ++E L ++
Sbjct: 124 VEVLKKFLEQKNKEKELIEAQTSETEKKLNELNSRVEKLHKTNEEQKNKIRKLERALKIS 183
Query: 241 KNKL 252
+ ++
Sbjct: 184 EEEM 187
>At5g48600.1 68418.m06011 structural maintenance of chromosomes
(SMC) family protein similar to SP|P50532 Chromosome
assembly protein XCAP-C {Xenopus laevis}; contains Pfam
profiles PF02483: SMC family C-terminal domain, PF02463:
RecF/RecN/SMC N terminal domain
Length = 1241
Score = 28.7 bits (61), Expect = 2.7
Identities = 16/54 (29%), Positives = 30/54 (55%)
Frame = +1
Query: 94 KLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNKNKLD 255
KL+K +D+ E+ A + E E+ +++ +L E+DLI+++ KLD
Sbjct: 390 KLQKV-LLDEEKKLEEIKAIAKVETEGYRSELTKIRAELEPWEKDLIVHRGKLD 442
>At5g43530.1 68418.m05322 SNF2 domain-containing protein / helicase
domain-containing protein / RING finger
domain-containing protein similar to SP|P36607 DNA
repair protein rad8 {Schizosaccharomyces pombe};
contains Pfam profiles PF00271: Helicase conserved
C-terminal domain, PF00176: SNF2 family N-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 1277
Score = 28.7 bits (61), Expect = 2.7
Identities = 12/38 (31%), Positives = 24/38 (63%)
Frame = +3
Query: 270 LEEKEKQLTATEAEVAALNRKVQQIDEDLEKSXXXSGT 383
LE+K++ + E + + +N+K++Q ++DL S GT
Sbjct: 251 LEKKDEVIKVLEDQPSEINKKLEQENDDLFSSGDSDGT 288
>At1g01950.1 68414.m00113 armadillo/beta-catenin repeat family
protein / kinesin motor family protein similar to
kinesin-like protein GB:CAB41097 GI:5541717 from
[Arabidopsis thaliana]; contains Pfam profiles PF00225:
Kinesin motor domain, PF00514:
Armadillo/beta-catenin-like repeat
Length = 894
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/37 (35%), Positives = 23/37 (62%)
Frame = +3
Query: 255 QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLEKS 365
Q +K + E E+QL A + +V +NR+ Q ++EK+
Sbjct: 424 QLDKVIAENERQLKAFDDDVERINRQAQNRISEVEKN 460
>At2g01750.1 68415.m00104 expressed protein
Length = 629
Score = 28.3 bits (60), Expect = 3.5
Identities = 11/44 (25%), Positives = 28/44 (63%)
Frame = +3
Query: 231 DPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDEDLEK 362
DP + + + D+ +K+++L+ ++AE+ AL +Q ++ +E+
Sbjct: 73 DPVKVELNRLENDVRDKDRELSESQAEIKALRLSERQREKAVEE 116
>At1g08730.1 68414.m00969 myosin heavy chain (PCR43) identical to
myosin heavy chain PCR43 (PIR:T00727) [Arabidopsis
thaliana]; similar to ESTs gb|R30087 and gb|AA394762
Length = 1538
Score = 28.3 bits (60), Expect = 3.5
Identities = 13/63 (20%), Positives = 34/63 (53%)
Frame = +1
Query: 61 MDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILN 240
++ + ++++++K+ +N +AD ++ A E +++ E +KK Q++E L
Sbjct: 983 IELMTEELESVKVTLENEKQRADDAVRKFEEAQESLEDKKKKLEETEKKGQQLQESLTRM 1042
Query: 241 KNK 249
+ K
Sbjct: 1043 EEK 1045
>At4g28800.1 68417.m04118 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain
Length = 478
Score = 27.9 bits (59), Expect = 4.7
Identities = 22/83 (26%), Positives = 38/83 (45%), Gaps = 6/83 (7%)
Frame = +1
Query: 4 PSRGGVFNSTGP*QQKAATMDAIKKKMQAMKLEK---DNAMDKADTCEQQARXANLRAEK 174
PS G T P Q + AT +K + + E+ + ++ T E R EK
Sbjct: 211 PSSGVCKAETEPVQIQPATESKLKAREETHGTEEARGSTSRKRSRTAEMHNLAERRRREK 270
Query: 175 VNEEVRELQK---KLAQVEEDLI 234
+NE+++ LQ+ + +VE D +
Sbjct: 271 INEKMKTLQQLIPRCNKVESDSV 293
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +3
Query: 267 DLEEKEKQLTATEAEVAALNRKVQQIDEDLE 359
DLEE + Q+ ++ E + L + V+ I DLE
Sbjct: 378 DLEESQHQVCISKEETSKLEKLVESIKSDLE 408
>At4g11080.1 68417.m01800 high mobility group (HMG1/2) family
protein similar to SP|P40618 High mobility group protein
HMG2A {Gallus gallus}; contains Pfam profile PF00505:
HMG (high mobility group) box
Length = 446
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/41 (29%), Positives = 23/41 (56%)
Frame = +1
Query: 82 MQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQK 204
++ MK+EK+ D ++ R + EK+ E+++LQK
Sbjct: 54 LEKMKIEKEKTEDLLKEKDEILRKKEVEQEKLKTELKKLQK 94
>At2g21230.1 68415.m02520 bZIP family transcription factor contains
a bZIP transcription factor basic domain signature
(PDOC00036)
Length = 519
Score = 27.9 bits (59), Expect = 4.7
Identities = 20/57 (35%), Positives = 31/57 (54%), Gaps = 4/57 (7%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQ--AMKLEKDNAMDK--ADTCEQQARXANLRAEKVNEEVRELQ 201
Q +A T+ A +Q +M L N+ K EQQA+ + +EK+NEEV+ L+
Sbjct: 406 QTEATTLSAQLTHLQRDSMGLTNQNSELKFRLQAMEQQAQLRDALSEKLNEEVQRLK 462
>At4g31570.1 68417.m04483 expressed protein
Length = 2712
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/28 (46%), Positives = 17/28 (60%)
Frame = +3
Query: 282 EKQLTATEAEVAALNRKVQQIDEDLEKS 365
E QL ATEA+V K+ ++ LEKS
Sbjct: 508 ENQLLATEAQVEDFTAKMNELQLSLEKS 535
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 270 LEEKEKQLTATEAEVAALNRKVQQIDEDLEKSXXXSG 380
L+E+E Q+ + V L ++VQQ + DL+K+ G
Sbjct: 2389 LDEEESQMEDLKLRVTELEQEVQQKNLDLQKAEASRG 2425
>At4g17520.1 68417.m02621 nuclear RNA-binding protein, putative
similar to nuclear RNA binding protein GI:6492264 from
[Arabidopsis thaliana]
Length = 360
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/62 (25%), Positives = 29/62 (46%)
Frame = +3
Query: 171 EGKRGSPRTPEEARPGGGRPDPEQEQT*QANKDLEEKEKQLTATEAEVAALNRKVQQIDE 350
EG+ + A +P+ ++ + K LEEK+K L AT+ E ++ K + +
Sbjct: 192 EGEATDAKNETPAEKAEEKPEDKEMTLEEYEKVLEEKKKALQATKVEERKVDTKAFEAMQ 251
Query: 351 DL 356
L
Sbjct: 252 QL 253
>At4g17220.1 68417.m02590 expressed protein
Length = 513
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +3
Query: 231 DPEQEQT*QANKDLEEKEKQLTATEAEVAAL 323
+P T L+EKEK+L A +AEV AL
Sbjct: 6 NPFVSDTSSLQSQLKEKEKELLAAKAEVEAL 36
>At3g12380.1 68416.m01543 actin/actin-like family protein similar to
SP|P53946 Actin-like protein ARP5 {Saccharomyces
cerevisiae}; contains Pfam profile PF00022: Actin
Length = 724
Score = 27.5 bits (58), Expect = 6.2
Identities = 11/29 (37%), Positives = 22/29 (75%)
Frame = +3
Query: 261 NKDLEEKEKQLTATEAEVAALNRKVQQID 347
+KD ++ ++Q + EAE+A L+ ++Q+ID
Sbjct: 530 SKDNDDDDEQPDSDEAELARLSSRLQEID 558
>At3g09000.1 68416.m01053 proline-rich family protein
Length = 541
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +2
Query: 119 TRPTPANSRLXTPT-SVLRR*TRKSANSRRSSPRWRKT 229
+RP R TPT S R T +++NSR S+P R T
Sbjct: 157 SRPATPTRRSTTPTTSTSRPVTTRASNSRSSTPTSRAT 194
>At1g63640.2 68414.m07198 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1065
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 82 MQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEE 225
M+ +KLEK +K + E+ E+ + E+R+L+++L V+E
Sbjct: 293 MEHIKLEKTRIEEKERSEEKDVVRLRKEKERSDAEIRQLKQELKLVKE 340
>At1g63640.1 68414.m07197 kinesin motor protein-related C-terminal
region is similar to C-term region of kinesin motor
protein GB:AAB51397 (Mus musculus); contains Pfam
profile: PF00225 Kinesin motor domain
Length = 1064
Score = 27.5 bits (58), Expect = 6.2
Identities = 14/48 (29%), Positives = 27/48 (56%)
Frame = +1
Query: 82 MQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEE 225
M+ +KLEK +K + E+ E+ + E+R+L+++L V+E
Sbjct: 293 MEHIKLEKTRIEEKERSEEKDVVRLRKEKERSDAEIRQLKQELKLVKE 340
>At1g22260.1 68414.m02782 expressed protein
Length = 857
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/48 (25%), Positives = 27/48 (56%)
Frame = +1
Query: 64 DAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKK 207
+ ++K+ +++L DN +K + EQ+ + + + + E+ EL KK
Sbjct: 256 EKLEKEKTSVQLSADNCFEKLVSSEQEVKKLDELVQYLVAELTELDKK 303
>At1g15910.1 68414.m01908 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 634
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/49 (26%), Positives = 26/49 (53%)
Frame = +1
Query: 64 DAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKL 210
+A++KKM+ M E D+ + + E + + N+E++ +KKL
Sbjct: 437 EAVQKKMKEMNDELDDKKAELEGLESMNSVLMTKERQSNDEIQAARKKL 485
>At4g36120.1 68417.m05141 expressed protein
Length = 981
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/53 (22%), Positives = 27/53 (50%)
Frame = +1
Query: 67 AIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEE 225
++ K+++ +KLEK+N + C Q E+ + + +L+ +L E+
Sbjct: 742 SLLKEVEQLKLEKENIAVELSRCLQNLESTKAWLEEKEQLISKLKSQLTSSED 794
>At1g78430.1 68414.m09139 tropomyosin-related similar to Tropomyosin
1 [Baker's yeast](SP:P17536) {Saccharomyces cerevisiae};
similar to enterophilin-2L (GI:12718845) [Cavia
porcellus]; similar to latent nuclear antigen
(GI:5669894) [Human herpesvirus 8]; similar to multiple
ligand-binding protein 1 (GI:1403575) [Streptococcus
sp.]
Length = 326
Score = 27.1 bits (57), Expect = 8.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = +1
Query: 64 DAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVEE 225
+ +K +++ E A K D + E+ NE +L+KKL VEE
Sbjct: 183 ETLKDQLKKTDTEMSCAKAKEDEIASKVSQIGEELEESNETTAKLKKKLESVEE 236
>At1g61000.1 68414.m06868 Nuf2 family protein contains Pfam PF03800:
Nuf2 family domain; similar to Myosin-like protein NUF2
(Nuclear filament-containing protein 2) (Nuclear
division protein nuf2) (Swiss-Prot:Q10173)
[Schizosaccharomyces pombe]
Length = 974
Score = 27.1 bits (57), Expect = 8.2
Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEE----VRELQKKL 210
Q+KAA ++ +K A +EK+ K E +L A+ V E + +L + L
Sbjct: 277 QEKAAILEVFEKVTNAKTVEKEFKALKDKLSEDGVAYKSLEAKVVERERIGKLEQLNESL 336
Query: 211 AQVEED 228
Q+E++
Sbjct: 337 KQLEKE 342
>At1g54930.1 68414.m06273 zinc knuckle (CCHC-type) family protein
contains INTERPRO domain, IPR001878: Zn-finger CCHC type
Length = 353
Score = 27.1 bits (57), Expect = 8.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +3
Query: 264 KDLEEKEKQLTATEAEVAALNRKVQQIDEDLEKS 365
K L E EKQ+ EAE + VQ++ ++ KS
Sbjct: 298 KQLLEVEKQVKLCEAETSEFAASVQEVSGEMAKS 331
>At1g35470.2 68414.m04401 SPla/RYanodine receptor (SPRY)
domain-containing protein similar to RanBPM [Homo
sapiens] GI:15080674; contains Pfam profile PF00622:
SPRY domain
Length = 467
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 67 AIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEV----RELQKKLAQVEED 228
A K + + ++++NA+D+ D+ + NLR N E+ ELQK Q+ +D
Sbjct: 271 ATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEIDTALAELQKLYPQIVQD 328
>At1g35470.1 68414.m04400 SPla/RYanodine receptor (SPRY)
domain-containing protein similar to RanBPM [Homo
sapiens] GI:15080674; contains Pfam profile PF00622:
SPRY domain
Length = 465
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/58 (29%), Positives = 30/58 (51%), Gaps = 4/58 (6%)
Frame = +1
Query: 67 AIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEV----RELQKKLAQVEED 228
A K + + ++++NA+D+ D+ + NLR N E+ ELQK Q+ +D
Sbjct: 271 ATKNTVPPIHIDQENAIDEDDSSYALKQRKNLRQLVRNGEIDTALAELQKLYPQIVQD 328
>At1g21810.1 68414.m02729 expressed protein
Length = 628
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/62 (19%), Positives = 30/62 (48%)
Frame = +1
Query: 43 QQKAATMDAIKKKMQAMKLEKDNAMDKADTCEQQARXANLRAEKVNEEVRELQKKLAQVE 222
Q+ + K++ ++ EKD + C++ + +L E V + E++ +L ++E
Sbjct: 340 QESRVCFQEVDTKLEKLQAEKDELDSEVICCKEAEKRFSLELEAVVGDKIEMEDELEKME 399
Query: 223 ED 228
+
Sbjct: 400 AE 401
>At1g13220.2 68414.m01534 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 1128
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 121 KADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNKNKLD 255
K ++ +Q R N R EKVNE ++KKL E++L K+D
Sbjct: 275 KEESITEQKRNLNQREEKVNE----IEKKLKLKEKELEEWNRKVD 315
>At1g13220.1 68414.m01533 nuclear matrix constituent protein-related
similar to nuclear matrix constituent protein 1 (NMCP1)
[Daucus carota] GI:2190187
Length = 391
Score = 27.1 bits (57), Expect = 8.2
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 121 KADTCEQQARXANLRAEKVNEEVRELQKKLAQVEEDLILNKNKLD 255
K ++ +Q R N R EKVNE ++KKL E++L K+D
Sbjct: 288 KEESITEQKRNLNQREEKVNE----IEKKLKLKEKELEEWNRKVD 328
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,199,856
Number of Sequences: 28952
Number of extensions: 154914
Number of successful extensions: 748
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 695
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 747
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1023490624
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -