Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0406
         (839 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1728 + 29076733-29079069                                         30   2.0  
03_02_0340 + 7635354-7635621,7635992-7636121,7636865-7636929,763...    28   8.1  
01_01_1205 - 9693702-9694517,9694591-9695076,9697014-9697095,969...    28   8.1  

>07_03_1728 + 29076733-29079069
          Length = 778

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 20/67 (29%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +2

Query: 167 STVRFDTLTLKP*KTPLRINRTTLSV---NRTYASNVASKSFAEIKALASDWPQTAR*HS 337
           S + + ++T++  KTP  +NRT  +V     TY +NV   +   +K   S  P+T     
Sbjct: 652 SHLNYPSITVELEKTPFTVNRTVTNVGPAESTYTANVTLAAETSLKLSVS--PETLVFSK 709

Query: 338 ASSPRTF 358
           A   +TF
Sbjct: 710 AGEKKTF 716


>03_02_0340 +
           7635354-7635621,7635992-7636121,7636865-7636929,
           7637255-7637529,7640204-7640441,7641095-7641228,
           7641340-7641414,7641675-7641776,7642154-7642263,
           7642334-7642430
          Length = 497

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 25  RAGPAEQXRPHRDRGXALLRLERGPPXXASHAHVTTVRFDIC 150
           RA   EQ +P   +G  LLR+    P   S +H+  V   +C
Sbjct: 2   RAAGDEQLQPRVGQGIPLLRVRYRGPGAGSLSHIAHVSIRVC 43


>01_01_1205 -
           9693702-9694517,9694591-9695076,9697014-9697095,
           9697876-9698051,9698326-9698580
          Length = 604

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 22/84 (26%), Positives = 37/84 (44%), Gaps = 3/84 (3%)
 Frame = -3

Query: 435 IIDVASCTATLRYARGDYYFYIEILRNVRG--DDAECYRAVCGQSLARAFISAKLLLATL 262
           ++    C A   ++ G + ++ E L N+R   +      AV   + AR F+   L+LAT 
Sbjct: 40  LLRAGMCVARFNFSHGSHEYHQETLDNLRAAMESTGILCAVMLDTKARDFVLGVLILATF 99

Query: 261 LAYVRFTLSVVLLIR-NGVFHGFS 193
                F   V  + R + +  GFS
Sbjct: 100 YFLQDFCAVVFTVGRCSSLILGFS 123


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,859,175
Number of Sequences: 37544
Number of extensions: 279591
Number of successful extensions: 452
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 452
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)