Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0405
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces pom...    99   3e-22
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    28   1.3  
SPCC4B3.09c |||mitochondrial ribosomal protein subunit L12|Schiz...    27   1.7  
SPBC215.08c |arg4||carbamoyl-phosphate synthase Arg4|Schizosacch...    26   5.3  
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c...    25   7.0  
SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4 |S...    25   9.2  

>SPCPB16A4.03c |ade10||IMP cyclohydrolase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 585

 Score =   99 bits (238), Expect = 3e-22
 Identities = 45/80 (56%), Positives = 60/80 (75%)
 Frame = +2

Query: 269 EVSYXVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKI 448
           EVS  VIAPGY PEAL+LL KKKGG YCVL++DP Y P+ +E + ++G++L+Q RN AKI
Sbjct: 328 EVSDGVIAPGYEPEALELLKKKKGGKYCVLQMDPKYVPAEIETRQVYGISLQQHRNHAKI 387

Query: 449 TAEXFKNVVTTKKDLPSNAV 508
               F+ VV+  KDLP +A+
Sbjct: 388 DFSLFEKVVSKNKDLPKSAL 407



 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 48/86 (55%), Positives = 56/86 (65%), Gaps = 2/86 (2%)
 Frame = +3

Query: 3   LNAWQLVKELKEALNLPAAASFKHVSPAGAAVGLPLTDEXAAVCMVAG--ELSXXXXXXX 176
           LN+W LVKEL+E + +PAAASFKHVSPAGAAVGLPL+D    V  V+   E +       
Sbjct: 237 LNSWPLVKELRENIGIPAAASFKHVSPAGAAVGLPLSDVEKKVYFVSDITEFTPLACAYA 296

Query: 177 XXXXXDRMXSFGDFVALSDPCXVXTA 254
                DRM SFGDF+ALSD   V TA
Sbjct: 297 RARGADRMSSFGDFIALSDTVDVCTA 322



 Score = 29.9 bits (64), Expect = 0.32
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 DLIVATIALKYTQSN 555
           DL++AT ALKYTQSN
Sbjct: 409 DLVIATTALKYTQSN 423


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 101 AHGSSGRGHVLEASRSRKVQRFLQLLDELPG 9
           + G  G+G     S  +  Q F Q+LDELPG
Sbjct: 264 SEGGGGKGIRQVTSTEKFAQAFQQVLDELPG 294


>SPCC4B3.09c |||mitochondrial ribosomal protein subunit
           L12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 206

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 3   LNAWQLVKELKEALNLPAAASFKHVSPAGAA 95
           L   +LVK+LKE LN+   A    V+PA A+
Sbjct: 90  LETSELVKQLKEKLNIAEIAPMAAVAPAVAS 120


>SPBC215.08c |arg4||carbamoyl-phosphate synthase
            Arg4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1160

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = +2

Query: 407  FGLTLEQKRNDAKITAEXFK----NVVTTKKDLPSNAVXTSSW 523
            F +TL    N AK+  E  K    +V++ KK++PS     S W
Sbjct: 1112 FNVTLINDVNCAKLFVESLKEKLPSVLSEKKEMPSEVKRWSEW 1154


>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 367

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 450 VIFASLRFCSNVKPKMVFCSMRL 382
           V+FA   FC    P ++FC+ +L
Sbjct: 3   VVFALGHFCEAEGPSIIFCTQKL 25


>SPBC32H8.11 |mei4||meiotic forkhead transcription factor Mei4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 517

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 13/25 (52%), Positives = 15/25 (60%)
 Frame = +3

Query: 396 KRPSSV*HWSKNVTTRRSPLXFSRT 470
           KRPSS  H  K +TTR  PL   R+
Sbjct: 182 KRPSSKCHEIKPLTTREIPLARKRS 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,045
Number of Sequences: 5004
Number of extensions: 32616
Number of successful extensions: 76
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 73
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)