Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0405
         (638 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_03_0620 - 16286207-16286342,16286861-16286955,16287051-162871...    29   4.1  
01_01_1015 + 8029884-8030676,8030755-8030771                           29   4.1  
12_02_1221 - 27130321-27130491,27130616-27130664,27131120-271311...    28   7.2  
03_06_0127 - 31872840-31872912,31873021-31873115,31873199-318732...    28   7.2  
07_01_0137 + 1005818-1006852,1007645-1007827,1008398-1008616,100...    27   9.5  
04_04_1323 + 32644956-32645096,32645488-32646126,32646701-326469...    27   9.5  
02_04_0255 - 21323382-21323966                                         27   9.5  

>05_03_0620 -
           16286207-16286342,16286861-16286955,16287051-16287158,
           16287262-16287357,16287446-16287604
          Length = 197

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 217 SWRSPTPVTXAPPHHLQGGVXXRHRAGILARSTQTTQQEKGRELLC 354
           SWR   P   +PP   Q  +  RH A   A +T ++  ++   LLC
Sbjct: 6   SWRLLPPAASSPPPRRQAALLRRHPA---ATTTSSSSGKRTTRLLC 48


>01_01_1015 + 8029884-8030676,8030755-8030771
          Length = 269

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 419 LEQKRNDAKITAEXFKNVVTTKKDLPSN-AVXTSSWRPLL*NTLRVTSVCF 568
           LE +  DAK  A    + V TKK  P N A   SS +PL  N+++  ++ F
Sbjct: 182 LEAEARDAKEQAAAPPSPVLTKKTTPKNSAANRSSDKPLKINSIQKPALAF 232


>12_02_1221 -
           27130321-27130491,27130616-27130664,27131120-27131188,
           27131845-27131939,27132032-27132121,27132885-27132968,
           27133122-27133211,27133310-27133624,27134184-27134399,
           27134736-27134774,27135337-27135408
          Length = 429

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -3

Query: 630 CSGCAXCCPRTDADHXSNXGRKQTEVTLSVF*SNGRHD 517
           C G A CCP    +  SN       +   VF   G +D
Sbjct: 158 CEGIAKCCPNAIVNVISNPVNSTVPIAAEVFKKAGTYD 195


>03_06_0127 -
           31872840-31872912,31873021-31873115,31873199-31873288,
           31873364-31873399,31874039-31874122,31874223-31874312,
           31874426-31874740,31875674-31875883,31875965-31876036
          Length = 354

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -3

Query: 630 CSGCAXCCPRTDADHXSNXGRKQTEVTLSVF*SNGRHD 517
           C G A CCP    +  SN       +   VF   G +D
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180


>07_01_0137 +
           1005818-1006852,1007645-1007827,1008398-1008616,
           1008682-1008690
          Length = 481

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/43 (37%), Positives = 19/43 (44%)
 Frame = -2

Query: 406 DGLLLHETRFVSGIDL*NTVVPALFLAE*FECFGRVSRRDDXV 278
           D LL  + R V G+   N V PAL +   F CF     R   V
Sbjct: 228 DSLLQLDLRSVRGLKQLNVVAPALQVLSVFFCFADTQARSQPV 270


>04_04_1323 +
           32644956-32645096,32645488-32646126,32646701-32646907,
           32647020-32647100,32647686-32648566,32648641-32648932,
           32649657-32650673,32651334-32651605,32651992-32652493
          Length = 1343

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = +2

Query: 296 GYSPEALKLLSKKKGGNYCVLKIDPTYEPSLME 394
           GYS E ++  SK  G + CV  +DP  EP +++
Sbjct: 59  GYSLEVMEEPSKDNGQSSCV--VDPELEPMMLD 89


>02_04_0255 - 21323382-21323966
          Length = 194

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = -2

Query: 136 MHTAASSSVSGKPTAAPAGDTCL 68
           M +++SSS+S  P +APAG T +
Sbjct: 1   MSSSSSSSLSPSPVSAPAGQTAI 23


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,846,258
Number of Sequences: 37544
Number of extensions: 273824
Number of successful extensions: 669
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 661
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 668
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)