Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0405
         (638 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)             113   9e-26
SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39)                 29   2.4  
SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)                    29   4.2  
SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.4  
SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)                 27   9.7  
SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)         27   9.7  
SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)                       27   9.7  

>SB_47576| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 896

 Score =  113 bits (273), Expect = 9e-26
 Identities = 54/100 (54%), Positives = 71/100 (71%)
 Frame = +2

Query: 269 EVSYXVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKI 448
           EVS  VIAP Y  EAL++L KKKGG YC+L++DP+YEP  +E +TIFGL LEQ RN+AKI
Sbjct: 365 EVSDGVIAPSYQNEALEVLKKKKGGKYCILQMDPSYEPPALESRTIFGLQLEQLRNNAKI 424

Query: 449 TAEXFKNVVTTKKDLPSNAVXTSSWRPLL*NTLRVTSVCF 568
            A+ FKNV+T +KDLP +AV   +   +     +  SVC+
Sbjct: 425 DADVFKNVMTKRKDLPESAVRDLTVASIALKYTQSNSVCY 464



 Score = 95.5 bits (227), Expect = 3e-20
 Identities = 49/86 (56%), Positives = 58/86 (67%), Gaps = 3/86 (3%)
 Frame = +3

Query: 6   NAWQLVKELKEALNLPAAASFKHVSPAGAAVGLPLTDEXAAVCMV---AGELSXXXXXXX 176
           N+WQLV+EL ++L +PAAASFKHVSPAGAAVG PLT + A VCMV      L+       
Sbjct: 274 NSWQLVRELHQSLGIPAAASFKHVSPAGAAVGTPLTPDEAKVCMVDDMLDRLTPLATAYA 333

Query: 177 XXXXXDRMXSFGDFVALSDPCXVXTA 254
                DRM SFGD+VALSD C + TA
Sbjct: 334 RARGADRMSSFGDWVALSDECDLATA 359


>SB_4328| Best HMM Match : Vicilin_N (HMM E-Value=0.39)
          Length = 738

 Score = 29.5 bits (63), Expect = 2.4
 Identities = 20/64 (31%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
 Frame = +1

Query: 361 DRSHLRTESHGAKDHLRFNIGAKT*RREDHR*XFQERRDHQEGFA-IERRXDLIVATIAL 537
           D+ HL TE    +D +R      T RR++     Q+R D +E  A +ER+ D ++ +  +
Sbjct: 494 DKGHLSTEQQQIRDDIRQRTEGFTARRDE---LVQQRDDVKEQIAELERQLD-VLRSQEM 549

Query: 538 KYTQ 549
           ++TQ
Sbjct: 550 RFTQ 553


>SB_47280| Best HMM Match : DUF655 (HMM E-Value=2.2)
          Length = 508

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)
 Frame = +2

Query: 284 VIAPGYSPEALKLLSKK----KGGNYCVLKIDPT---YEPSLMEQKTIFGLTLEQKRNDA 442
           V+    +PE L  + KK    K  NYC L + P    Y+  L+E+  I   +L  + + +
Sbjct: 131 VLLETVNPEELSRILKKHPYDKFLNYCYLFLKPIWEQYDRPLLEKYIIGEASLGDEDHVS 190

Query: 443 KITAEXFKNVVTTKKDLPS 499
               E F   +  KK++PS
Sbjct: 191 PSLIELFDEYMDPKKEIPS 209


>SB_10994| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 179

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 13/26 (50%), Positives = 15/26 (57%)
 Frame = +3

Query: 438 TRRSPLXFSRTS*PPRRICHRTPXGP 515
           +RRS L    T  PP +IC RTP  P
Sbjct: 133 SRRSDLRSDWTPAPPSKICGRTPSPP 158


>SB_53468| Best HMM Match : E-MAP-115 (HMM E-Value=4.2)
          Length = 583

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/55 (27%), Positives = 30/55 (54%)
 Frame = +1

Query: 316 QTTQQEKGRELLCFKDRSHLRTESHGAKDHLRFNIGAKT*RREDHR*XFQERRDH 480
           + + +E+  E    ++RSH +   H  KDH++     K  +R+D +  + +R+DH
Sbjct: 479 ERSHEERSEEERTHEERSHRKY--HMRKDHMK-----KKHKRKDQKRKYHKRKDH 526


>SB_34869| Best HMM Match : Phage_integrase (HMM E-Value=0.087)
          Length = 897

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +2

Query: 284 VIAPGYSPEALKLLSKKKGGNYCVL 358
           ++APG+SP   KL+S   GG +  L
Sbjct: 153 IVAPGFSPVPAKLVSSIVGGRFVEL 177


>SB_24294| Best HMM Match : RVT_2 (HMM E-Value=0)
          Length = 627

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 22/61 (36%), Positives = 30/61 (49%)
 Frame = +2

Query: 308 EALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKITAEXFKNVVTTKK 487
           E  KL SK K    C+L +D   +P   +  T+        RNDA  TAE   +V TT+K
Sbjct: 207 ERKKLDSKAKK---CILNLDTAKKPKNTDSMTL--------RNDACFTAEMSFSVKTTEK 255

Query: 488 D 490
           +
Sbjct: 256 E 256


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,110,391
Number of Sequences: 59808
Number of extensions: 282109
Number of successful extensions: 571
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 569
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1608851125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)