Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0405
         (638 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical pr...   100   2e-21
U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical pr...   100   2e-21
U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical pr...    94   7e-20

>U58747-2|AAQ91905.1|  393|Caenorhabditis elegans Hypothetical
           protein C55F2.1c protein.
          Length = 393

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 50/100 (50%), Positives = 63/100 (63%)
 Frame = +2

Query: 269 EVSYXVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKI 448
           EVS  V+AP + P AL LL+KKK GNYCVLKI+P Y PS  E++T+FGL L QKRN+A I
Sbjct: 208 EVSDGVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVI 267

Query: 449 TAEXFKNVVTTKKDLPSNAVXTSSWRPLL*NTLRVTSVCF 568
            AE F NVV +  +L   A+       +     +  SVCF
Sbjct: 268 NAETFNNVVGSANELNKQAIDDLIVATIALKYAQSNSVCF 307



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 49/89 (55%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   LNAWQLVKELKEALNLPAAASFKHVSPAGAAVGLPLTDEXAAVCMVAG-----ELSXXXX 167
           LN WQLVKEL +A  +PAAASFKHVSPAGAAVGLPL +  AA CMV+      +      
Sbjct: 114 LNGWQLVKELSDATKMPAAASFKHVSPAGAAVGLPLNETEAACCMVSDLPIDTKKPSLAA 173

Query: 168 XXXXXXXXDRMXSFGDFVALSDPCXVXTA 254
                   DRM SFGDF+ALS+ C   TA
Sbjct: 174 AYARARGADRMSSFGDFIALSEKCDELTA 202


>U58747-1|AAL27234.3|  594|Caenorhabditis elegans Hypothetical
           protein C55F2.1b protein.
          Length = 594

 Score = 99.5 bits (237), Expect = 2e-21
 Identities = 50/100 (50%), Positives = 63/100 (63%)
 Frame = +2

Query: 269 EVSYXVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKI 448
           EVS  V+AP + P AL LL+KKK GNYCVLKI+P Y PS  E++T+FGL L QKRN+A I
Sbjct: 338 EVSDGVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVI 397

Query: 449 TAEXFKNVVTTKKDLPSNAVXTSSWRPLL*NTLRVTSVCF 568
            AE F NVV +  +L   A+       +     +  SVCF
Sbjct: 398 NAETFNNVVGSANELNKQAIDDLIVATIALKYAQSNSVCF 437



 Score = 92.7 bits (220), Expect = 2e-19
 Identities = 49/89 (55%), Positives = 56/89 (62%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   LNAWQLVKELKEALNLPAAASFKHVSPAGAAVGLPLTDEXAAVCMVAG-----ELSXXXX 167
           LN WQLVKEL +A  +PAAASFKHVSPAGAAVGLPL +  AA CMV+      +      
Sbjct: 244 LNGWQLVKELSDATKMPAAASFKHVSPAGAAVGLPLNETEAACCMVSDLPIDTKKPSLAA 303

Query: 168 XXXXXXXXDRMXSFGDFVALSDPCXVXTA 254
                   DRM SFGDF+ALS+ C   TA
Sbjct: 304 AYARARGADRMSSFGDFIALSEKCDELTA 332


>U58747-3|AAL27233.2|  420|Caenorhabditis elegans Hypothetical
           protein C55F2.1a protein.
          Length = 420

 Score = 94.3 bits (224), Expect = 7e-20
 Identities = 44/75 (58%), Positives = 55/75 (73%)
 Frame = +2

Query: 269 EVSYXVIAPGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGLTLEQKRNDAKI 448
           EVS  V+AP + P AL LL+KKK GNYCVLKI+P Y PS  E++T+FGL L QKRN+A I
Sbjct: 130 EVSDGVVAPDFDPAALSLLAKKKNGNYCVLKINPNYLPSETEERTVFGLRLRQKRNNAVI 189

Query: 449 TAEXFKNVVTTKKDL 493
            AE F NVV +  ++
Sbjct: 190 NAETFNNVVGSANEV 204



 Score = 77.0 bits (181), Expect = 1e-14
 Identities = 35/47 (74%), Positives = 39/47 (82%)
 Frame = +3

Query: 3   LNAWQLVKELKEALNLPAAASFKHVSPAGAAVGLPLTDEXAAVCMVA 143
           LN WQLVKEL +A  +PAAASFKHVSPAGAAVGLPL +  AA CMV+
Sbjct: 19  LNGWQLVKELSDATKMPAAASFKHVSPAGAAVGLPLNETEAACCMVS 65



 Score = 30.7 bits (66), Expect = 0.92
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 511 DLIVATIALKYTQSN 555
           DLIVATIALKY QSN
Sbjct: 245 DLIVATIALKYAQSN 259


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,448,661
Number of Sequences: 27780
Number of extensions: 197781
Number of successful extensions: 427
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 411
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 423
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1416829972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)