Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0405
         (638 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g42670.1 68418.m05198 agenet domain-containing protein contai...    28   6.0  
At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal ident...    28   6.0  
At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR...    27   7.9  
At4g17410.1 68417.m02607 expressed protein                             27   7.9  

>At5g42670.1 68418.m05198 agenet domain-containing protein contains
           Pfam PF05641: Agenet domain
          Length = 294

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = +2

Query: 293 PGYSPEALKLLSKKKGGNYCVLKIDPTYEPSLMEQKTIFGL 415
           PG    + K+  + +GGN   L I P Y P   E +   GL
Sbjct: 70  PGEGIHSTKVFQQLEGGNEKCLMIRPVYPPQCRENEVDGGL 110


>At5g09660.1 68418.m01117 malate dehydrogenase, glyoxysomal
           identical to SP|Q9ZP05; identical to cDNA microbody
           NAD-dependent malate dehydrogenase GI:3929650
          Length = 354

 Score = 27.9 bits (59), Expect = 6.0
 Identities = 12/38 (31%), Positives = 15/38 (39%)
 Frame = -3

Query: 630 CSGCAXCCPRTDADHXSNXGRKQTEVTLSVF*SNGRHD 517
           C G A CCP    +  SN       +   VF   G +D
Sbjct: 143 CEGVAKCCPNAIVNLISNPVNSTVPIAAEVFKKAGTYD 180


>At5g46450.1 68418.m05721 disease resistance protein (TIR-NBS-LRR
           class), putative domain signature TIR-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 1123

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 475 HDVLEXFSGDLRVVTFLLQC*TEDGLLLHETRF 377
           +DVLE  +G  +V+   L     DGL +HE+ F
Sbjct: 519 YDVLEDNTGTKKVLGIALDINETDGLYIHESAF 551


>At4g17410.1 68417.m02607 expressed protein 
          Length = 744

 Score = 27.5 bits (58), Expect = 7.9
 Identities = 11/24 (45%), Positives = 13/24 (54%)
 Frame = +3

Query: 465 RTS*PPRRICHRTPXGPHRGDHCS 536
           RT+ PP  +CHR     H   HCS
Sbjct: 112 RTTPPPGYVCHRCNVSGHFIQHCS 135


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,116,635
Number of Sequences: 28952
Number of extensions: 192524
Number of successful extensions: 406
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 406
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1314848736
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)