Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC637.07 |moe1||translation initiation factor eIF3d Moe1|Schiz...    51   1e-07
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git...    28   1.1  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    26   4.6  
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    25   8.1  
SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit Sen2|Sc...    25   8.1  

>SPAC637.07 |moe1||translation initiation factor eIF3d
           Moe1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 567

 Score = 50.8 bits (116), Expect = 1e-07
 Identities = 23/48 (47%), Positives = 29/48 (60%)
 Frame = +1

Query: 91  FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWTMVQDK 234
           F  P +    + WGP E      D+PY PFSKGD LGKI+DW++ Q K
Sbjct: 5   FKLPELAPVKSAWGPPETEQIGGDIPYAPFSKGDRLGKIADWSVDQPK 52



 Score = 31.5 bits (68), Expect = 0.093
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +3

Query: 261 FGAGSSYAYFHDEDESTFHLVDTTRVQK 344
           +GA S + Y H EDES+F ++D   V +
Sbjct: 77  YGASSIFGYQHSEDESSFSVIDRGSVNR 104


>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
           Git5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 305

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 3/65 (4%)
 Frame = +1

Query: 196 LGKISDWTMVQDKKYQ-NKYAHSSGLVRLMHTS--MMKMKAPFTWWTLLEYKSRTSHISV 366
           LGKI D  +  D KY  +   +   LV  +HTS  +   +AP  W     +   T  I+ 
Sbjct: 21  LGKIPDIDISTDGKYLLSASTNDVLLVWDLHTSNKVAFFEAPSVWIMTCAFSPSTKSIAA 80

Query: 367 GGLED 381
           GGL +
Sbjct: 81  GGLNN 85


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = +3

Query: 18  WFKIVT*HSELRCRNTYC 71
           W+  V  + ELRC+N YC
Sbjct: 576 WWTPVYVNQELRCKNAYC 593


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
 Frame = -2

Query: 324 PPGERCFHLHHGSMHKTNQPRT--VSIFVLVLLVLHHCPIT 208
           PP +       GS H  N      ++IF++ L++ H C IT
Sbjct: 483 PPPKYDDIFQSGSSHDENHDDNYFINIFIIFLIIKHMCLIT 523


>SPAPB17E12.07c |sen2||tRNA-splicing endonuclease subunit
           Sen2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 380

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/27 (44%), Positives = 13/27 (48%)
 Frame = +1

Query: 94  ISPIIQDNPTGWGPYEMPDQFRDMPYQ 174
           + PII  NP  W PY     FR  P Q
Sbjct: 20  LPPIILTNPLTWIPYIYRYLFRKTPRQ 46


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,184,429
Number of Sequences: 5004
Number of extensions: 41440
Number of successful extensions: 85
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)