Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_07_0140 - 27982037-27983794                                         38   0.004
06_03_1304 - 29187930-29188273,29188926-29189039,29189453-291897...    28   4.7  

>05_07_0140 - 27982037-27983794
          Length = 585

 Score = 38.3 bits (85), Expect = 0.004
 Identities = 20/54 (37%), Positives = 28/54 (51%), Gaps = 9/54 (16%)
 Frame = +1

Query: 85  MRFISPIIQDNPTGWGPYEM---PDQF------RDMPYQPFSKGDXLGKISDWT 219
           M F   ++  NP GWGP +    P           +P+ PFS+ D LG+I+DWT
Sbjct: 1   MGFDVGVVAFNPEGWGPPDTAPAPASLGGGAAAASIPFAPFSRSDKLGRIADWT 54


>06_03_1304 -
           29187930-29188273,29188926-29189039,29189453-29189722,
           29190098-29190234,29190483-29191159
          Length = 513

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/50 (26%), Positives = 24/50 (48%)
 Frame = +3

Query: 162 HALSAIQQRRSIRQDK*LDNGARQEVPEQICSQFGAGSSYAYFHDEDEST 311
           H L+   Q++   + +  D+ AR+  P+Q    FG+      F+D  + T
Sbjct: 228 HGLAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSRLATMFYDARQQT 277


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,825,318
Number of Sequences: 37544
Number of extensions: 293499
Number of successful extensions: 579
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 568
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)