Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)              65   3e-11
SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.4  
SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)                   27   8.5  

>SB_54784| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 553

 Score = 65.3 bits (152), Expect = 3e-11
 Identities = 25/40 (62%), Positives = 31/40 (77%)
 Frame = +1

Query: 88  RFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKI 207
           +F +P IQDNP GWGP  +P  F+D+PYQPFSK D LGK+
Sbjct: 6   KFCAPEIQDNPDGWGPCSVPTAFKDIPYQPFSKADRLGKV 45



 Score = 46.0 bits (104), Expect = 2e-05
 Identities = 18/32 (56%), Positives = 27/32 (84%), Gaps = 1/32 (3%)
 Frame = +3

Query: 255 SQFGAGSS-YAYFHDEDESTFHLVDTTRVQKP 347
           SQFG G+  ++Y+H+EDE++F LVDT+R Q+P
Sbjct: 67  SQFGTGNQMFSYYHEEDETSFQLVDTSRTQRP 98


>SB_7781| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 447

 Score = 27.9 bits (59), Expect = 6.4
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +3

Query: 228 RQEVPEQICSQFGAGSSYAYFHDEDESTFHLVDTTRVQKPYQSY 359
           R + P  +C+ + +     Y H    +T  ++ T  VQ+PY  Y
Sbjct: 226 RVQPPCPLCTLYASNHRTRYIHSTRPTTVPVIYTLLVQQPYPLY 269


>SB_18912| Best HMM Match : UCH (HMM E-Value=5.3e-06)
          Length = 781

 Score = 27.5 bits (58), Expect = 8.5
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 321 PGERCFHLHHGSMHKTNQPRTVSIFVLV 238
           PG  C  L HGS+H   Q  + + FV +
Sbjct: 426 PGRACIPLKHGSLHLLRQGLSDTFFVQI 453


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,770,682
Number of Sequences: 59808
Number of extensions: 340193
Number of successful extensions: 721
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 720
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1397989795
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)