Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT023923-1|ABB36427.1|  560|Drosophila melanogaster RH04128p pro...    89   5e-18
AF220363-1|AAF37264.1|  560|Drosophila melanogaster eukaryotic t...    89   5e-18
AE014297-3351|AAF56158.1|  560|Drosophila melanogaster CG10161-P...    89   5e-18
AY119516-1|AAM50170.1|  551|Drosophila melanogaster GH14470p pro...    72   5e-13
AE014297-1458|AAF54756.1|  551|Drosophila melanogaster CG4810-PA...    72   5e-13

>BT023923-1|ABB36427.1|  560|Drosophila melanogaster RH04128p
           protein.
          Length = 560

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/69 (60%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
 Frame = +1

Query: 67  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWTMV--QDKKY 240
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK D LGKI DWT     DKKY
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 241 QNKYAHSSG 267
           QNKYA S G
Sbjct: 66  QNKYASSFG 74



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 255 SQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 347
           S FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 71  SSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101


>AF220363-1|AAF37264.1|  560|Drosophila melanogaster eukaryotic
           translation initiationfactor 3 p66 subunit protein.
          Length = 560

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/69 (60%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
 Frame = +1

Query: 67  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWTMV--QDKKY 240
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK D LGKI DWT     DKKY
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 241 QNKYAHSSG 267
           QNKYA S G
Sbjct: 66  QNKYASSFG 74



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 255 SQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 347
           S FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 71  SSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101


>AE014297-3351|AAF56158.1|  560|Drosophila melanogaster CG10161-PB
           protein.
          Length = 560

 Score = 88.6 bits (210), Expect = 5e-18
 Identities = 42/69 (60%), Positives = 47/69 (68%), Gaps = 2/69 (2%)
 Frame = +1

Query: 67  TAGRRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWTMV--QDKKY 240
           TA + P  F  P +Q N  GWGP E+PD F+D+PYQPFSK D LGKI DWT     DKKY
Sbjct: 7   TAAQFPS-FEKPTVQFNEKGWGPCELPDTFKDVPYQPFSKNDRLGKICDWTNTSNNDKKY 65

Query: 241 QNKYAHSSG 267
           QNKYA S G
Sbjct: 66  QNKYASSFG 74



 Score = 56.0 bits (129), Expect = 3e-08
 Identities = 22/31 (70%), Positives = 26/31 (83%)
 Frame = +3

Query: 255 SQFGAGSSYAYFHDEDESTFHLVDTTRVQKP 347
           S FG G  Y+Y+H+EDE+TFHLVDT RVQKP
Sbjct: 71  SSFGTGIQYSYYHEEDETTFHLVDTARVQKP 101


>AY119516-1|AAM50170.1|  551|Drosophila melanogaster GH14470p
           protein.
          Length = 551

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +1

Query: 91  FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWT-MVQDKKYQNKYAHSSG 267
           FI P ++ N  GWGP E+P+   D+PYQPF K D LGKI DWT MV +KK+ +KYA + G
Sbjct: 7   FIKPYVEYNEHGWGPCEVPEL--DVPYQPFCKSDRLGKICDWTAMVPEKKFPSKYASTFG 64



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
 Frame = +3

Query: 231 QEVPEQICSQFGAGSSYAYFHDEDESTFHLVDTT--RVQKPYQ 353
           ++ P +  S FG  S YAYF+++D+STFHLVDTT  +  KPYQ
Sbjct: 53  KKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQ 95


>AE014297-1458|AAF54756.1|  551|Drosophila melanogaster CG4810-PA
           protein.
          Length = 551

 Score = 72.1 bits (169), Expect = 5e-13
 Identities = 33/60 (55%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
 Frame = +1

Query: 91  FISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWT-MVQDKKYQNKYAHSSG 267
           FI P ++ N  GWGP E+P+   D+PYQPF K D LGKI DWT MV +KK+ +KYA + G
Sbjct: 7   FIKPYVEYNEHGWGPCEVPEL--DVPYQPFCKSDRLGKICDWTAMVPEKKFPSKYASTFG 64



 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 23/43 (53%), Positives = 31/43 (72%), Gaps = 2/43 (4%)
 Frame = +3

Query: 231 QEVPEQICSQFGAGSSYAYFHDEDESTFHLVDTT--RVQKPYQ 353
           ++ P +  S FG  S YAYF+++D+STFHLVDTT  +  KPYQ
Sbjct: 53  KKFPSKYASTFGNNSQYAYFYEDDDSTFHLVDTTGSKATKPYQ 95


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,436,396
Number of Sequences: 53049
Number of extensions: 491818
Number of successful extensions: 1316
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1264
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1309
length of database: 24,988,368
effective HSP length: 81
effective length of database: 20,691,399
effective search space used: 2317436688
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)