Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical pr...    40   0.001
U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical pr...    28   5.6  
U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical pr...    27   9.7  

>Z12017-3|CAA78049.1|  570|Caenorhabditis elegans Hypothetical
           protein R08D7.3 protein.
          Length = 570

 Score = 40.3 bits (90), Expect = 0.001
 Identities = 17/47 (36%), Positives = 28/47 (59%), Gaps = 1/47 (2%)
 Frame = +1

Query: 106 IQDNPTGWGPYEMPDQFRD-MPYQPFSKGDXLGKISDWTMVQDKKYQ 243
           + DN  GWGP        + +P+Q F+K D +G+++DW  V D+ Y+
Sbjct: 11  LADNTVGWGPLASSSSADEPVPFQQFNKADRIGRVADWIGV-DRFYR 56



 Score = 30.7 bits (66), Expect = 0.79
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = +3

Query: 255 SQFGAGSSYAYFHDEDESTFHLVDTTR 335
           S   AGS + Y H  DE  F LVDT++
Sbjct: 69  SAANAGSQFDYIHGMDEHNFQLVDTSK 95


>U70844-4|AAB09095.2| 1105|Caenorhabditis elegans Hypothetical
           protein ZK154.5 protein.
          Length = 1105

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 17/64 (26%), Positives = 27/64 (42%)
 Frame = +1

Query: 76  RRPMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISDWTMVQDKKYQNKYA 255
           ++P     PIIQD P    P+E    F ++       G+    I   T++    + NK  
Sbjct: 386 KKPEILDEPIIQDEPRTMRPHEHCAIFNNLSTPKPRHGENTTSIRTVTIMPKSMHLNKNG 445

Query: 256 HSSG 267
            S+G
Sbjct: 446 ESAG 449


>U39742-5|AAK39199.1|  767|Caenorhabditis elegans Hypothetical
           protein C25F6.4 protein.
          Length = 767

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 15/60 (25%), Positives = 30/60 (50%)
 Frame = +1

Query: 205 ISDWTMVQDKKYQNKYAHSSGLVRLMHTSMMKMKAPFTWWTLLEYKSRTSHISVGGLEDS 384
           ++D  ++   + Q +Y + +G     H  M+    P + W  + YK+RT H+ + G  D+
Sbjct: 86  LNDTFLITSVETQGRYGNGTGREFASHY-MIDYLRPGSQW--IRYKNRTGHVYMDGNFDT 142


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,237,273
Number of Sequences: 27780
Number of extensions: 239960
Number of successful extensions: 490
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 484
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 489
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)