Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0404
         (583 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g44320.1 68418.m05427 eukaryotic translation initiation facto...    31   0.74 
At4g20980.1 68417.m03037 eukaryotic translation initiation facto...    30   0.98 
At5g51110.1 68418.m06338 expressed protein                             29   3.0  
At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase, pu...    29   3.0  
At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5 ...    27   9.1  
At1g76340.1 68414.m08869 integral membrane family protein contai...    27   9.1  

>At5g44320.1 68418.m05427 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 588

 Score = 30.7 bits (66), Expect = 0.74
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 10/45 (22%)
 Frame = +1

Query: 115 NPTGWGPYEMPDQ----------FRDMPYQPFSKGDXLGKISDWT 219
           N  GWGP +  D             ++P+  FS+ + LG+++DWT
Sbjct: 14  NSDGWGPPDASDTSSTSVAAANLLPNVPFASFSRSEKLGRVADWT 58


>At4g20980.1 68417.m03037 eukaryotic translation initiation factor 3
           subunit 7, putative / eIF-3 zeta, putative / eIF3d,
           putative similar to initiation factor 3d [Arabidopsis
           thaliana] GI:12407755, SP|O15371 Eukaryotic translation
           initiation factor 3 subunit 7 (eIF-3 zeta) (eIF3 p66)
           (eIF3d) {Homo sapiens}; contains Pfam profile PF05091:
           Eukaryotic translation initiation factor 3 subunit 7
           (eIF-3)
          Length = 591

 Score = 30.3 bits (65), Expect = 0.98
 Identities = 9/20 (45%), Positives = 16/20 (80%)
 Frame = +1

Query: 160 DMPYQPFSKGDXLGKISDWT 219
           ++P+  FS+ D LG+++DWT
Sbjct: 43  NVPFASFSRSDKLGRVADWT 62


>At5g51110.1 68418.m06338 expressed protein
          Length = 220

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 186 RRSIRQDK*LDNGARQEVPEQICSQFG 266
           R ++ QD   D GAR   PE+I SQFG
Sbjct: 50  RSNLAQDFLGDFGARDPYPEEIASQFG 76


>At3g01480.1 68416.m00072 peptidyl-prolyl cis-trans isomerase,
           putative / cyclophilin, putative / rotamase, putative
           similar to peptidyl-prolyl cis-trans isomerase,
           chloroplast precursor (40 kDa thylakoid lumen PPIase, 40
           kDa thylakoid lumen rotamase) [Spinacia oleracea]
           SWISS-PROT:O49939
          Length = 437

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/50 (30%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
 Frame = +1

Query: 85  MRFISPIIQDNPTGWGPYEMPDQFRDMP-YQPFSKGDXLGKISDWTMVQD 231
           ++++  I +D   G+ PYE+P+++R+MP  +  +  D   KI D   ++D
Sbjct: 207 LKYVGGIEEDMVDGF-PYEVPEEYRNMPLLKGRASVDMKVKIKDNPNIED 255


>At5g54520.1 68418.m06788 WD-40 repeat family protein contains 5
           WD-40 repeats (PF00400); similar to pre-mRNA splicing
           factor PRP17 (SP:O60508) [Homo sapiens]
          Length = 457

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 14/44 (31%), Positives = 20/44 (45%)
 Frame = +1

Query: 82  PMRFISPIIQDNPTGWGPYEMPDQFRDMPYQPFSKGDXLGKISD 213
           P R++S   +           PDQ  D+  +P+S    LG ISD
Sbjct: 81  PGRYVSKRERSLLASLSTIPTPDQSSDLSQKPYSSPTVLGSISD 124


>At1g76340.1 68414.m08869 integral membrane family protein contains
           Pfam profile  PF00892: Integral membrane protein;
           similar to GDP-mannose transporter (SP:Q941R4)
           [Arabidopsis thaliana] and to LPG2 protein (GI:9998817)
           [Leishmania mexicana]
          Length = 372

 Score = 27.1 bits (57), Expect = 9.1
 Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = -3

Query: 125 PVGLSCIIG-EINLIGLRPAVRVPTS*FTMLGYNLKPLT 12
           PVGLSC+ G  I+  G      +  + FT+LG   K LT
Sbjct: 254 PVGLSCLFGLAISFFGFSCRRAISATGFTVLGIVNKLLT 292


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,616,358
Number of Sequences: 28952
Number of extensions: 224860
Number of successful extensions: 450
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 443
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 450
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1141585696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)