Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0403
         (759 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr...    26   5.1  
SPBC577.05c |rec27|mug41|meiotic recombination protein Rec27|Sch...    25   8.9  

>SPBC3H7.02 |||sulfate transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 877

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 8/74 (10%)
 Frame = -3

Query: 445 SVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSE--------DFDGFFHLELVG 290
           +V  RG+ ++ + AS  P++ PA    +N      VED+         DF    H++  G
Sbjct: 631 TVTRRGNANIYKKASDRPWNDPAPRKKKNAPE---VEDTRPLLRAIILDFSAVNHIDTTG 687

Query: 289 VDEGLSTREHAHLY 248
           V   + TR+   +Y
Sbjct: 688 VQALVDTRKELEIY 701


>SPBC577.05c |rec27|mug41|meiotic recombination protein
           Rec27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 134

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 9/36 (25%), Positives = 22/36 (61%)
 Frame = +3

Query: 81  VNLDMKMKELCIMKLLDHILQXTMFEDIKEIAKEYN 188
           VNL  K  ++   ++++H+L+    ++I+   K+Y+
Sbjct: 12  VNLKKKQLQITSSEIIEHVLEELNLKNIERRVKKYD 47


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,742,241
Number of Sequences: 5004
Number of extensions: 51383
Number of successful extensions: 122
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 363302114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)