Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0403
         (759 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0444 - 8543426-8543635,8543945-8544151,8544293-8544400,854...    28   9.3  

>03_02_0444 -
           8543426-8543635,8543945-8544151,8544293-8544400,
           8544744-8544803,8544914-8544989,8545190-8545347,
           8545479-8545541,8545653-8545737,8546423-8547438
          Length = 660

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -3

Query: 358 IEVLSVVEDSEDFDGFFHLELVGVDEGLSTREHAHLYISMN 236
           +E L + E SE+F G   L     DE  ST   +  YIS N
Sbjct: 269 LEELRLGETSEEFTGTSSLSTTNDDETSSTTTESMFYISPN 309


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,813,711
Number of Sequences: 37544
Number of extensions: 369184
Number of successful extensions: 801
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 787
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2027850416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)