Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0403
         (759 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_40684| Best HMM Match : NIF (HMM E-Value=0)                         30   2.3  
SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)                        28   7.2  
SB_4302| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-05)                  28   9.5  
SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.5  
SB_33399| Best HMM Match : Ank (HMM E-Value=0)                         28   9.5  

>SB_40684| Best HMM Match : NIF (HMM E-Value=0)
          Length = 402

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 20/61 (32%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +2

Query: 260 MLPRGETFVHTNELQMEEAVKVFRVLYYAKDFDVFMRTACWMR---ERINGGMFVYAFTA 430
           +L   ET VH +  ++E+A   F V Y    + VF+RT   ++   ER++    V  FTA
Sbjct: 220 VLDLDETLVHCSLNKLEDATLSFPVSYQDITYQVFVRTRPHLKYFLERVSKVFEVILFTA 279

Query: 431 A 433
           +
Sbjct: 280 S 280


>SB_24073| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 794

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 703 RFERPSMKIGXLTSFLE*KSRRTPXXQV-NHYQNC 602
           R  RP++K+G  T  LE   RR    ++ NH++ C
Sbjct: 744 RAHRPNLKLGEFTEILEKIGRRDVIHEIENHHRTC 778


>SB_8644| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 1011

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +2

Query: 371 TACWMRERINGGMFVYAFTAACFHR 445
           TAC+  + I+GG+ V+++  + FHR
Sbjct: 836 TACFWGQLISGGITVFSYRISSFHR 860


>SB_4302| Best HMM Match : 7tm_1 (HMM E-Value=4.4e-05)
          Length = 421

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/39 (35%), Positives = 19/39 (48%)
 Frame = +3

Query: 396 STEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLTP 512
           ST  CS  +++PR+        S  PL+     TS LTP
Sbjct: 346 STRPCSPNVMVPRSPLSSHEAFSVSPLVDLDEFTSKLTP 384


>SB_44753| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1379

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 17/40 (42%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
 Frame = +3

Query: 411 SSTLLLPRASTEPTARVSTCPL---LTRSIPTSSLTPCHQ 521
           SST+  P++ST PT + ST P     T   P SS +P  Q
Sbjct: 517 SSTIHTPQSSTNPTPQSSTSPTPQSSTIHTPQSSTSPTPQ 556


>SB_33399| Best HMM Match : Ank (HMM E-Value=0)
          Length = 1416

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 14/31 (45%), Positives = 19/31 (61%)
 Frame = +3

Query: 417 TLLLPRASTEPTARVSTCPLLTRSIPTSSLT 509
           +LLLP      +A   T PLL++SIP+ S T
Sbjct: 208 SLLLPDMPITSSAMAPTFPLLSQSIPSMSTT 238


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,973,418
Number of Sequences: 59808
Number of extensions: 409697
Number of successful extensions: 989
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 974
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2070332524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)