Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0403
         (759 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four ...    34   0.48 
BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like pro...    32   2.6  
AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.     32   2.6  

>AB158503-1|BAD69710.1|  151|Homo sapiens splice variant of four and
           a half LIM domain protein 2 protein.
          Length = 151

 Score = 34.3 bits (75), Expect = 0.48
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = +3

Query: 378 AG*EKGSTEACSSTLLLPRASTEPTARVSTCPLLTRSIPTSSLT 509
           AG    S+   +S+ L PR S+  T R+S CP +  ++P S+ +
Sbjct: 63  AGMRPASSATAASSQLEPRVSSPKTIRISVCPAMRNNMPCSAFS 106


>BC146771-1|AAI46772.1| 1649|Homo sapiens CTD-binding SR-like
           protein rA9 protein.
          Length = 1649

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -3

Query: 475 SGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 296
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 28  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 86

Query: 295 VG 290
            G
Sbjct: 87  AG 88


>AB040975-1|BAA96066.1| 1654|Homo sapiens KIAA1542 protein protein.
          Length = 1654

 Score = 31.9 bits (69), Expect = 2.6
 Identities = 23/62 (37%), Positives = 28/62 (45%)
 Frame = -3

Query: 475 SGQVETLAVGSVEARGSKSVDEHASVDPFSHPARSPHENIEVLSVVEDSEDFDGFFHLEL 296
           +G  E  +VGS    G  S  EH           S  E++E  S  EDSED DG   LE+
Sbjct: 33  AGDFEESSVGSSGDSGDDSDSEHGDGTDGEDEGASEEEDLEDRSGSEDSED-DGETLLEV 91

Query: 295 VG 290
            G
Sbjct: 92  AG 93


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 98,471,220
Number of Sequences: 237096
Number of extensions: 1952412
Number of successful extensions: 4474
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4474
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 9183116696
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)