Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0401
         (860 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|ch...    47   4e-06
SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subuni...    26   6.0  
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha...    26   7.9  

>SPAC17H9.13c |||glutamate 5-kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 402

 Score = 46.8 bits (106), Expect = 4e-06
 Identities = 36/120 (30%), Positives = 60/120 (50%)
 Frame = +1

Query: 250 IGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQELL 429
           I +KLG++ I  E  +   +  L+ I+E V +    G   ++V+SG +A G ++L     
Sbjct: 14  IVIKLGTSSICDEKTHEPLISNLSLIVETVVKLRKLGHNVVLVSSGGIAMGLRRL----- 68

Query: 430 MSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVLVTKPD 609
             L  R    PS         +   +A+   GQ  L+S++D +F+Q    IAQVL+T+ D
Sbjct: 69  -DLPKR----PS--------KLSAVQAIAAVGQGRLISLWDTLFTQLRQPIAQVLITRND 115


>SPAC2E1P5.04c |cwg2|orb7|geranylgeranyltransferase I beta subunit
           Cwg2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 355

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = -1

Query: 464 LGDKVSRMDKDMSSSCVSFCR 402
           LGD +SR+D+D+  + V  C+
Sbjct: 110 LGDNLSRIDRDLIKNFVELCK 130


>SPBC12D12.07c |trx2||mitochondrial thioredoxin
           Trx2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 121

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
 Frame = +1

Query: 508 ALRR-FGQSELMSMYDAM--FSQYNVKIAQVLVTKPDFYXE 621
           ALRR F  S ++   +A+  F  YN +I+   VT  DFY +
Sbjct: 5   ALRRSFTSSRILRKVNAVESFGDYNTRISADKVTVVDFYAD 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,199,458
Number of Sequences: 5004
Number of extensions: 59333
Number of successful extensions: 145
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)