Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fbpv0401
(860 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_06_1340 + 36424426-36424542,36425212-36425283,36425383-364254... 88 7e-18
05_05_0078 - 22229607-22229685,22229851-22229921,22229992-222300... 75 6e-14
09_01_0019 + 403078-404211 30 2.7
05_01_0426 + 3364341-3364713,3364823-3364963,3365389-3365510,336... 29 4.8
05_01_0120 - 828834-831143 29 4.8
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505... 29 4.8
07_01_0239 + 1744353-1746365 29 6.3
01_06_1229 + 35551522-35552169 29 6.3
09_04_0265 + 16233596-16233752,16234206-16234720,16236199-162362... 28 8.3
07_03_1345 + 25919379-25920866,25921342-25921962,25922733-259228... 28 8.3
>01_06_1340 +
36424426-36424542,36425212-36425283,36425383-36425486,
36425567-36425669,36425757-36425918,36426043-36426320,
36429428-36429578,36429795-36429959,36430077-36430154,
36430284-36430373,36430460-36430546,36430636-36430722,
36430779-36430890,36431033-36431136,36431435-36431510,
36431954-36432104,36432246-36432314,36432408-36432474,
36433060-36433089
Length = 700
Score = 88.2 bits (209), Expect = 7e-18
Identities = 51/123 (41%), Positives = 77/123 (62%)
Frame = +1
Query: 244 QKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQE 423
++I +K+G+AV+T +G LA+GRL ++ EQV + + EG E I+VTSGAV GRQ+L
Sbjct: 34 KRIIIKVGTAVVTGPNGR-LAMGRLGALCEQVKQLNFEGYEVILVTSGAVGVGRQRLKYR 92
Query: 424 LLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVLVTK 603
L++ S + +P +D +A GQS LM++YD +FSQ +V +Q+LVT
Sbjct: 93 KLVNSSFADLQNPQ--------MDMDGKACAAVGQSVLMAIYDTLFSQLDVTSSQLLVTD 144
Query: 604 PDF 612
DF
Sbjct: 145 RDF 147
>05_05_0078 -
22229607-22229685,22229851-22229921,22229992-22230058,
22230195-22230263,22230376-22230526,22230915-22230990,
22231466-22231569,22231676-22231772,22231845-22231931,
22232016-22232102,22232190-22232279,22232405-22232482,
22232595-22232759,22232898-22233048,22233610-22233887,
22234072-22234233,22234324-22234560,22234633-22234704,
22235187-22235273,22235498-22235557
Length = 755
Score = 75.4 bits (177), Expect = 6e-14
Identities = 51/135 (37%), Positives = 76/135 (56%), Gaps = 10/135 (7%)
Frame = +1
Query: 262 LGSAVITREDGNGLALGRLASIIEQVA----------ECHHEGRECIMVTSGAVAFGRQK 411
+G+AV++R+DG LALGR+ ++ EQV E + G E I+VTSGAV GRQ+
Sbjct: 50 VGTAVVSRQDGR-LALGRVGALCEQVPNQRKVAMQVKELNSLGYEVILVTSGAVGVGRQR 108
Query: 412 LTQELLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQV 591
L L++ S + P LD +A GQS LM++YD +F+Q +V +Q+
Sbjct: 109 LRYRKLVNSSFADLQKPQME--------LDGKACAAVGQSGLMALYDMLFNQLDVSSSQL 160
Query: 592 LVTKPDFYXEETRKK 636
LVT DF + R++
Sbjct: 161 LVTDSDFENPKFREQ 175
>09_01_0019 + 403078-404211
Length = 377
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/43 (39%), Positives = 25/43 (58%)
Frame = +1
Query: 127 TADDRKICARRRLERRQESIG*R*KEAENLH*QIAAKVRQKIG 255
+ADDRK +RRR R+ ES G + + H Q A + ++K G
Sbjct: 334 SADDRKRSSRRRRHRKSESSG---SDGDERHGQGAKRSKEKRG 373
>05_01_0426 +
3364341-3364713,3364823-3364963,3365389-3365510,
3365939-3366202,3366289-3366419,3366819-3367026,
3367121-3367186,3367276-3367353,3368038-3368079
Length = 474
Score = 29.1 bits (62), Expect = 4.8
Identities = 12/37 (32%), Positives = 20/37 (54%)
Frame = -3
Query: 558 HGIIHRHELRLTEPPQRPRIQNAACVLSSVIAW*QSL 448
HG + L T PP PR++ ++C++ +A Q L
Sbjct: 95 HGTLASRPLPPTHPPPTPRVRKSSCIVRLEVARLQKL 131
>05_01_0120 - 828834-831143
Length = 769
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/44 (40%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +2
Query: 116 GSDKLPTTGRYAPGEGLSVDKRALASAERK-QRTFTDRSQLKYA 244
G+ K G PGEGL +D +L S RK Q F D+ K A
Sbjct: 106 GASKAEGAGSAKPGEGLRLDLSSLRSQGRKDQIAFFDKECSKVA 149
>04_04_0329 +
24449574-24449633,24450261-24450320,24450510-24450562,
24450913-24450973,24451481-24451666,24451877-24451984,
24452196-24453418,24453571-24454405
Length = 861
Score = 29.1 bits (62), Expect = 4.8
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +1
Query: 439 SMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYD 552
S+ + L+PS T E A ++L AL R G+ E+M+ D
Sbjct: 681 SLHDVLTPSSPTTEKALAVLINLALTRAGKKEIMADSD 718
>07_01_0239 + 1744353-1746365
Length = 670
Score = 28.7 bits (61), Expect = 6.3
Identities = 16/50 (32%), Positives = 26/50 (52%)
Frame = +1
Query: 457 SPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVLVTKP 606
SP+ + ++ SIL P L+ + ++ YD Q NV +A V + KP
Sbjct: 152 SPAGYYTDEPYSILHPLRLKSGEEMQVWIDYDHRRMQLNVTLAPVPMAKP 201
>01_06_1229 + 35551522-35552169
Length = 215
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +2
Query: 113 IGSDKLPTTGRYAPGEGLSVDKRALASAERKQRTFTDR 226
+G ++ GR PG LS D +++A+ ER+ R +DR
Sbjct: 23 LGEGRMRGGGRRRPGAKLSTDPQSVAARERRHR-ISDR 59
>09_04_0265 +
16233596-16233752,16234206-16234720,16236199-16236229,
16236559-16237001
Length = 381
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +1
Query: 460 PSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVL 594
P D + G DP LR F Q+ELM AM + + + +VL
Sbjct: 42 PGDFGFDPLGLGSDPELLRWFAQAELMHSRWAMLAVAGILVPEVL 86
>07_03_1345 +
25919379-25920866,25921342-25921962,25922733-25922893,
25923284-25923422,25923509-25923592,25923944-25923982,
25924037-25924222,25924347-25924478,25924810-25925009,
25925294-25925498,25925618-25925944
Length = 1193
Score = 28.3 bits (60), Expect = 8.3
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +2
Query: 5 RVVYTRRKKKCCMYLNSVKTMLRFSRNA 88
R+ +T +K CC + V LRF NA
Sbjct: 650 RITHTTAQKPCCCSITDVTVGLRFKENA 677
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,676,157
Number of Sequences: 37544
Number of extensions: 425412
Number of successful extensions: 1053
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1029
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1051
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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