Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0401
         (860 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)                   144   6e-35
SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)                      34   0.17 

>SB_5004| Best HMM Match : AA_kinase (HMM E-Value=0)
          Length = 835

 Score =  144 bits (350), Expect = 6e-35
 Identities = 79/162 (48%), Positives = 112/162 (69%), Gaps = 1/162 (0%)
 Frame = +1

Query: 235 KVRQKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKL 414
           K  +++ VKLGSAVITR D  G+ALGRL+SI+EQ+AE  + GRE ++VTSGAVAFG+QKL
Sbjct: 48  KKAKRVIVKLGSAVITRGDECGVALGRLSSIVEQLAELQNSGREMLLVTSGAVAFGKQKL 107

Query: 415 TQELLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVL 594
             E L+S S+R+TL P D   +D G +++PRA    GQ  LMS+Y+AMF+QY +   Q+L
Sbjct: 108 RHENLLSQSVRQTLKPQDGLNKDNG-VIEPRACAAVGQGGLMSLYEAMFAQYGLTCGQIL 166

Query: 595 VTKPDFYXEETRKKSLLHAIGADLSXH-VPIRGIPIDAVSPP 717
           +T+PD   +   +++L   + A +S   +PI     DAV+PP
Sbjct: 167 LTRPDL-RDAYARENLRSTVEALISMKCIPIIN-ENDAVAPP 206


>SB_36803| Best HMM Match : RhoGAP (HMM E-Value=0)
          Length = 1277

 Score = 33.9 bits (74), Expect = 0.17
 Identities = 19/47 (40%), Positives = 27/47 (57%)
 Frame = +1

Query: 403 RQKLTQELLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMS 543
           RQ++  ELL S +  +TL P ++ RE   S   PR  RRF  S L++
Sbjct: 711 RQRVNSELLESSTKTDTL-PMNNPRERVSSDQSPRFYRRFSSSTLLN 756


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,848,776
Number of Sequences: 59808
Number of extensions: 474971
Number of successful extensions: 987
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 986
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2455286845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)