Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0401
         (860 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    24   1.6  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    23   2.7  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   6.3  
AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II ...    22   6.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    22   8.4  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    22   8.4  

>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 50  NSVKTMLRFSRNAIRKRFYSVIGSDKLPTTGRYAP 154
           N +KT L   ++ I ++ Y+V+ S   P TG  +P
Sbjct: 79  NPIKTALSVCKSLIERQVYAVVVSH--PLTGDLSP 111


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 23.4 bits (48), Expect = 2.7
 Identities = 9/14 (64%), Positives = 10/14 (71%)
 Frame = -3

Query: 531 RLTEPPQRPRIQNA 490
           R  EPP  PR+QNA
Sbjct: 637 RTLEPPIMPRVQNA 650


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +3

Query: 492  HFGSEGAAAVRSVGA 536
            H+GS G+   RSVG+
Sbjct: 1833 HYGSRGSVGRRSVGS 1847


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 229 RSVSEGSLLPFSASQCSLVYAQAFAGRISSGR 134
           R   E  L+P+  ++ + VYA   AGR S  R
Sbjct: 464 RQERESELVPYLENKGNGVYAWIGAGRDSDSR 495


>AB013287-1|BAA87893.1|  190|Apis mellifera calmodulin kinase II
           protein.
          Length = 190

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 316 LASIIEQVAECHHEG 360
           +  I+E V  CHH G
Sbjct: 15  IQQILESVHHCHHNG 29


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 672 TCTDSWNTH*CRQPS 716
           TC + WNT  C  P+
Sbjct: 138 TCGNPWNTRYCLTPT 152


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +3

Query: 672 TCTDSWNTH*CRQPS 716
           TC + WNT  C  P+
Sbjct: 191 TCGNPWNTRYCLTPT 205


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,710
Number of Sequences: 438
Number of extensions: 4369
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 27795333
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)