Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0401
         (860 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthet...    94   9e-20
At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthet...    89   3e-18
At4g15730.1 68417.m02394 expressed protein                             29   3.0  
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ...    29   4.0  
At1g18410.1 68414.m02299 kinesin motor protein-related similar t...    29   5.3  
At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to SP|P1...    28   7.0  
At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR ...    28   7.0  
At1g73860.1 68414.m08552 kinesin motor protein-related similar t...    28   9.2  

>At3g55610.1 68416.m06177 delta 1-pyrroline-5-carboxylate synthetase
           B / P5CS B (P5CS2) identical to SP|P54888
          Length = 726

 Score = 94.3 bits (224), Expect = 9e-20
 Identities = 57/135 (42%), Positives = 82/135 (60%)
 Frame = +1

Query: 232 AKVRQKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQK 411
           AK  ++I VK+G+AV+T + G  LALGRL +I EQ+AE + +G E I+V+SGAV  GRQ+
Sbjct: 11  AKDVKRIVVKVGTAVVTGKGGR-LALGRLGAICEQLAELNSDGFEVILVSSGAVGLGRQR 69

Query: 412 LTQELLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQV 591
           L    L++ S  +   P           LD +A    GQS LM+ Y+ MF Q +V +AQ+
Sbjct: 70  LRYRQLVNSSFADLQKPQME--------LDGKACAGVGQSSLMAYYETMFDQLDVTVAQM 121

Query: 592 LVTKPDFYXEETRKK 636
           LVT   F  ++ RK+
Sbjct: 122 LVTDSSFRDKDFRKQ 136


>At2g39800.1 68415.m04888 delta 1-pyrroline-5-carboxylate synthetase
           A / P5CS A (P5CS1) identical to SP:P54887:P5C1_ARATH
          Length = 717

 Score = 89.4 bits (212), Expect = 3e-18
 Identities = 53/131 (40%), Positives = 78/131 (59%)
 Frame = +1

Query: 244 QKIGVKLGSAVITREDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQE 423
           ++I VK+G+AV+T + G  LALGRL ++ EQ+AE + +G E I+V+SGAV  GRQ+L   
Sbjct: 15  KRIVVKVGTAVVTGKGGR-LALGRLGALCEQLAELNSDGFEVILVSSGAVGLGRQRLRYR 73

Query: 424 LLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKIAQVLVTK 603
            L++ S  +   P           LD +A    GQS LM+ Y+ MF Q +V  AQ+LV  
Sbjct: 74  QLVNSSFADLQKPQTE--------LDGKACAGVGQSSLMAYYETMFDQLDVTAAQLLVND 125

Query: 604 PDFYXEETRKK 636
             F  ++ RK+
Sbjct: 126 SSFRDKDFRKQ 136


>At4g15730.1 68417.m02394 expressed protein
          Length = 1059

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
 Frame = -2

Query: 214  GSLLPFSASQCSLVYAQAFAGRISSGRRQFIRSNNAVKTLSD-SISRET*HCFDTIQ 47
            G+LLP + SQ + V    F G ++       +S NA K ++D S  R+   C   I+
Sbjct: 969  GNLLPVARSQLNFVPLLDFTGSMNLAMEASAKSQNAFKAVTDTSEERKHGDCISAIK 1025


>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
           contains Pfam domain, PF00642: Zinc finger
           C-x8-C-x5-C-x3-H type (and similar)
          Length = 310

 Score = 29.1 bits (62), Expect = 4.0
 Identities = 28/100 (28%), Positives = 43/100 (43%), Gaps = 2/100 (2%)
 Frame = +1

Query: 424 LLMSLSMRETLSPSDHTREDAGSILDPRALRRFGQSELMSMYDAMFSQYNVKI--AQVLV 597
           L  S+   E+LSPS  +     S +D     R  Q++L+  YD +   Y + +   Q L+
Sbjct: 48  LYNSIFSPESLSPSPPSSSSPPSRVDTTTEHRLLQAKLILEYDELNEHYELCLNRLQSLM 107

Query: 598 TKPDFYXEETRKKSLLHAIGADLSXHVPIRGIPIDAVSPP 717
           T+ D    E      L    +DL   + I      +VSPP
Sbjct: 108 TELDSLRHE---NDSLRFENSDLLKLIRISTSSSSSVSPP 144


>At1g18410.1 68414.m02299 kinesin motor protein-related similar to
            kinesin-related protein GB:AAF24855 GI:6692749 from
            [Arabidopsis thaliana]
          Length = 1140

 Score = 28.7 bits (61), Expect = 5.3
 Identities = 21/81 (25%), Positives = 39/81 (48%)
 Frame = -2

Query: 322  KRVDRELVRFHLLS*SQHYLTSHQSSGVL*LRSVSEGSLLPFSASQCSLVYAQAFAGRIS 143
            +RVDR  V    L  +QH   S  + G +     S+ S +P+  S+ + +   +  GR  
Sbjct: 863  ERVDRSEVTGDRLKEAQHINKSLSALGDVIFSLASKSSHVPYRNSKLTQLLQSSLGGRAK 922

Query: 142  SGRRQFIRSNNAVKTLSDSIS 80
            +    F++ N  + + S+S+S
Sbjct: 923  T--LMFVQLNPDITSYSESMS 941


>At2g18790.1 68415.m02187 phytochrome B (PHYB) Identical to
           SP|P14713 Phytochrome B {Arabidopsis thaliana}
          Length = 1172

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 20/61 (32%), Positives = 28/61 (45%), Gaps = 6/61 (9%)
 Frame = +1

Query: 286 EDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAV------AFGRQKLTQELLMSLSMR 447
           +DG+ +A GR +  +  +  CHH    CI             AFG Q L  EL ++L M 
Sbjct: 382 DDGSNVASGRSSMRLWGLVVCHHTSSRCIPFPLRYACEFLMQAFGLQ-LNMELQLALQMS 440

Query: 448 E 450
           E
Sbjct: 441 E 441


>At1g50180.1 68414.m05627 disease resistance protein (CC-NBS-LRR
           class), putative domain signature CC-NBS-LRR exists,
           suggestive of a disease resistance protein.
          Length = 857

 Score = 28.3 bits (60), Expect = 7.0
 Identities = 22/70 (31%), Positives = 29/70 (41%)
 Frame = +1

Query: 283 REDGNGLALGRLASIIEQVAECHHEGRECIMVTSGAVAFGRQKLTQELLMSLSMRETLSP 462
           ++ G    L RLA I+ +    H  G E   +TS         L   +  S+  RE LS 
Sbjct: 87  KQKGMKRVLRRLACILNEAVSLHSVGSEIREITSRLSKIAASMLDFGIKESMG-REGLSL 145

Query: 463 SDHTREDAGS 492
           SD  RE   S
Sbjct: 146 SDSLREQRQS 155


>At1g73860.1 68414.m08552 kinesin motor protein-related similar to
           kinesin-C GB:AAF04841 from [Strongylocentrotus
           purpuratus]
          Length = 1030

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 22/81 (27%), Positives = 38/81 (46%)
 Frame = -2

Query: 322 KRVDRELVRFHLLS*SQHYLTSHQSSGVL*LRSVSEGSLLPFSASQCSLVYAQAFAGRIS 143
           +RVDR  V    L  +QH   S  S G +     S+ S +P+  S+ + +   +  GR  
Sbjct: 754 ERVDRSEVTGDRLREAQHINKSLSSLGDVIFSLASKSSHVPYRNSKLTQLLQTSLGGRAK 813

Query: 142 SGRRQFIRSNNAVKTLSDSIS 80
           +    F++ N    + S+S+S
Sbjct: 814 T--LMFVQLNPDATSYSESMS 832


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,039,846
Number of Sequences: 28952
Number of extensions: 323259
Number of successful extensions: 684
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 655
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 681
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 2009406400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)