Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0400
         (580 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0154 + 32029133-32029765                                         31   0.66 
10_08_1016 - 22262760-22264331                                         29   3.5  
01_05_0005 - 16886553-16886946,16887079-16887404                       28   6.2  
03_06_0399 - 33632811-33633107,33633236-33633385,33633705-336340...    27   8.2  

>03_06_0154 + 32029133-32029765
          Length = 210

 Score = 31.1 bits (67), Expect = 0.66
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +1

Query: 115 QGSIPEREPEKRLPHPRKAAGAQITHSRHGAGSDEK*RYGTLTR 246
           Q ++P R+   RLP  RK +  +    R G G D+   + T+ R
Sbjct: 129 QSNLPFRDAPVRLPTQRKVSNLRARRERDGGGGDDVDAHATIIR 172


>10_08_1016 - 22262760-22264331
          Length = 523

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 13/47 (27%), Positives = 27/47 (57%)
 Frame = -2

Query: 510 REHRDRILILNRRFLETPAHRRYXRKRVSITADAVXRQRGAQMQLRA 370
           R     ++++ + F + P  RR+  KR+ +  DAV + +G +++ RA
Sbjct: 404 RHSLPEVILVKKSFAKRPRTRRWKLKRLPMEEDAVNKAKG-ELEKRA 449


>01_05_0005 - 16886553-16886946,16887079-16887404
          Length = 239

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 362 RNNFSIRYWSWNYRGC 315
           R+N S RYW W   GC
Sbjct: 90  RSNSSFRYWRWQPHGC 105


>03_06_0399 -
           33632811-33633107,33633236-33633385,33633705-33634029,
           33635315-33635982,33636967-33637212,33637405-33637545,
           33637807-33637856,33637943-33638060,33638304-33638910,
           33639339-33639463,33639813-33639869,33639952-33640023,
           33640100-33640232,33640305-33640428,33640522-33640576,
           33640672-33641322
          Length = 1272

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 169 PSLDVVAVSQAPSPESNPDSPLP 101
           P LD   ++Q PSP +NP  P P
Sbjct: 55  PPLDEETLAQFPSPPTNPSPPPP 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,955,018
Number of Sequences: 37544
Number of extensions: 315994
Number of successful extensions: 870
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 850
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)