Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0400
         (580 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical pr...    28   5.5  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    28   5.5  
AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium bind...    28   5.5  
Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical pr...    27   7.3  

>Z69634-4|CAA93455.2|  674|Caenorhabditis elegans Hypothetical
           protein B0001.6 protein.
          Length = 674

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 18/75 (24%), Positives = 28/75 (37%), Gaps = 4/75 (5%)
 Frame = +1

Query: 97  SRVTGNQGSIPEREPEKRLPHPRKAAGAQITHSRHGAGSDEK*R----YGTLTRPRNGMS 264
           SR+           P +RLP P   A   + H  H + S +  R     G  T PR+G  
Sbjct: 459 SRIVRENPDANYERPARRLPTPPLEANDNLEHQSHDSSSTDGLRDTSPVGNNTNPRSGSP 518

Query: 265 TL*IF*RGTIGGQVW 309
           +       ++   +W
Sbjct: 519 SCHSDTHSSVSSSLW 533


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -3

Query: 464 KRRLTDDXSANVXVSPRMRXTDSAAHKCNYELFNRNNFSIRY 339
           K R  ++  +N+ V      + SA HK NYEL    +F +RY
Sbjct: 91  KGRSEEEIQSNINVYSEFPISLSALHKHNYEL--NQDFELRY 130


>AF099925-14|AAX55690.1|  679|Caenorhabditis elegans Calcium binding
           protein homologprotein 1, isoform d protein.
          Length = 679

 Score = 27.9 bits (59), Expect = 5.5
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -1

Query: 172 LPSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTI 68
           +P+  V+  ++ PS +S     + VTT  V+ TTI
Sbjct: 559 VPTTTVIQTTETPSTKSKTTKKVKVTTTTVSTTTI 593


>Z81588-2|CAB04712.1|  379|Caenorhabditis elegans Hypothetical
           protein T07D10.2 protein.
          Length = 379

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 10/21 (47%), Positives = 13/21 (61%)
 Frame = -2

Query: 189 GNLRACCLPWMW*PFLRLPLR 127
           GNL +C  PW+W  F R  L+
Sbjct: 330 GNLNSCMNPWLWFHFNRKQLK 350


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,220,594
Number of Sequences: 27780
Number of extensions: 240686
Number of successful extensions: 568
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 568
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1205362812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)