Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0400
         (580 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    22   5.0  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    22   5.0  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    22   5.0  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    22   5.0  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    22   5.0  
DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex det...    21   6.7  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 422 SPRMRXTDSAAHKCNYELFNRNNFSIRYWSWNY 324
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 422 SPRMRXTDSAAHKCNYELFNRNNFSIRYWSWNY 324
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 422 SPRMRXTDSAAHKCNYELFNRNNFSIRYWSWNY 324
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 422 SPRMRXTDSAAHKCNYELFNRNNFSIRYWSWNY 324
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 9/33 (27%), Positives = 16/33 (48%)
 Frame = -3

Query: 422 SPRMRXTDSAAHKCNYELFNRNNFSIRYWSWNY 324
           S   +   S ++  NY  +N NN+    ++ NY
Sbjct: 76  SKEPKIISSLSNNYNYSNYNNNNYKQLCYNINY 108


>DQ325107-1|ABD14121.1|  176|Apis mellifera complementary sex
           determiner protein.
          Length = 176

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 9/25 (36%), Positives = 13/25 (52%)
 Frame = -3

Query: 260 IPLRGLVRVPYRYFSSLPAPCREWV 186
           IP+   + VP  Y + LP P   W+
Sbjct: 111 IPVPVPIPVPVYYGNFLPRPMGPWI 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,184
Number of Sequences: 438
Number of extensions: 3276
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)