Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fbpv0400
         (580 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g59940.1 68416.m06689 kelch repeat-containing F-box family pr...    29   1.7  
At1g32770.1 68414.m04040 no apical meristem (NAM) family protein...    29   1.7  
At3g17920.1 68416.m02282 leucine-rich repeat family protein cont...    29   3.0  
At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identica...    29   3.0  
At2g44130.1 68415.m05489 kelch repeat-containing F-box family pr...    28   5.2  
At4g02180.1 68417.m00290 DC1 domain-containing protein contains ...    27   9.0  

>At3g59940.1 68416.m06689 kelch repeat-containing F-box family
           protein contains Pfam profiles PF01344: Kelch motif,
           PF00646: F-box domain
          Length = 418

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -3

Query: 245 LVRVPYRYFSSLPAPCREW 189
           LVRVP+++ SS+ + CR W
Sbjct: 28  LVRVPFQFHSSIKSVCRSW 46


>At1g32770.1 68414.m04040 no apical meristem (NAM) family protein
           similar to OsNAC7 protein GB:BAA89801 GI:6730944 from
           [Oryza sativa]
          Length = 358

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = -2

Query: 543 SKICRPHFXTNREHRDRILILNRRFLETP 457
           S IC P   T  +H+D +L +    LETP
Sbjct: 227 SNICMPESQTTTQHQDDVLFMQLPSLETP 255


>At3g17920.1 68416.m02282 leucine-rich repeat family protein
           contains leucine rich repeat (LRR) domains, Pfam:PF00560
          Length = 962

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -1

Query: 178 RLLPSLDVVAVSQAPSPESNPDSPLPVTTMVVAE 77
           RLLPSL VV+   +P+ +  P S LP + + V E
Sbjct: 84  RLLPSLKVVSSLPSPARDPTPLSLLPFSKLKVLE 117


>At1g35230.1 68414.m04369 arabinogalactan-protein (AGP5) identical
           to gi_3883128_gb_AAC77827
          Length = 133

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 14/36 (38%), Positives = 18/36 (50%)
 Frame = -1

Query: 169 PSLDVVAVSQAPSPESNPDSPLPVTTMVVAETTIES 62
           PS    A + APSP +NP    P T   V++   ES
Sbjct: 39  PSQSPRATAPAPSPSANPPPSAPTTAPPVSQPPTES 74


>At2g44130.1 68415.m05489 kelch repeat-containing F-box family
           protein very low similarity to SP|Q9ER30 Kelch-related
           protein 1 (Sarcosin) {Rattus norvegicus}; contains Pfam
           profiles PF01344: Kelch motif, PF00646: F-box domain
          Length = 409

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 260 IPLRGLVRVPYRYFSSLPAPCREW 189
           + L  LVRVP+++ S++ + CR W
Sbjct: 27  LALECLVRVPFQFQSAMRSVCRSW 50


>At4g02180.1 68417.m00290 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 989

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = -2

Query: 216 VTTCPVPGVGNLRACCLPWMW*PFLRLP 133
           V+   VPGVGN +   LPW     + +P
Sbjct: 330 VSRTSVPGVGNSKGVLLPWFHRKHIMMP 357


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,469,938
Number of Sequences: 28952
Number of extensions: 226660
Number of successful extensions: 519
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 519
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1131744440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)